RNA–Protein interactions for RNA: ENST00000450533.5

TTC3-210, Transcript of tetratricopeptide repeat domain 3, humanhuman

TSL 1 (best)

Gene TTC3, Length 2,451 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3-210ENST00000450533 NISCHQ9Y2I1 1504 aa46.23■■■■■ 4.99
TTC3-210ENST00000450533 SHROOM4Q9ULL8 1493 aa39.48■■■■□ 3.91
TTC3-210ENST00000450533 CCDC180Q9P1Z9 1646 aa39.28■■■■□ 3.88
TTC3-210ENST00000450533 ZCCHC6Q5VYS8 1495 aaKnown RBP39.08■■■■□ 3.85
TTC3-210ENST00000450533 SUPT5HO00267 1087 aaKnown RBP38.68■■■■□ 3.78
TTC3-210ENST00000450533 DCAF8L2P0C7V8 631 aa38.49■■■■□ 3.75
TTC3-210ENST00000450533 DCAF1Q9Y4B6 1507 aa37.86■■■■□ 3.65
TTC3-210ENST00000450533 CHIC1Q5VXU3 224 aa37.51■■■■□ 3.59
TTC3-210ENST00000450533 MYO15BQ96JP2 1530 aa37.36■■■■□ 3.57
TTC3-210ENST00000450533 SCRIBQ14160 1630 aa36.92■■■■□ 3.5
TTC3-210ENST00000450533 ABCC9O60706 1549 aa36.86■■■■□ 3.49
TTC3-210ENST00000450533 RSF1Q96T23 1441 aaPredicted RBP36.58■■■■□ 3.45
TTC3-210ENST00000450533 LOC105371045A0A1W2PR82 267 aa36.45■■■■□ 3.43
TTC3-210ENST00000450533 NACADO15069 1562 aa36.36■■■■□ 3.41
TTC3-210ENST00000450533 PCGF6Q9BYE7 350 aa36.31■■■■□ 3.4
TTC3-210ENST00000450533 RB1CC1Q8TDY2 1594 aa36.2■■■■□ 3.39
TTC3-210ENST00000450533 HRCP23327 699 aa36.19■■■■□ 3.38
TTC3-210ENST00000450533 CECR2Q9BXF3 1484 aa36.12■■■■□ 3.37
TTC3-210ENST00000450533 TRIM41Q8WV44 630 aa35.99■■■■□ 3.35
TTC3-210ENST00000450533 MROH2BQ7Z745 1585 aa35.97■■■■□ 3.35
TTC3-210ENST00000450533 WIZO95785 1651 aa35.78■■■■□ 3.32
TTC3-210ENST00000450533 FAM9AQ8IZU1 332 aaPredicted RBP35.76■■■■□ 3.32
TTC3-210ENST00000450533 TRIM26Q12899 539 aaPredicted RBP35.58■■■■□ 3.29
TTC3-210ENST00000450533 PPARGC1BQ86YN6 1023 aaKnown RBP35.55■■■■□ 3.28
TTC3-210ENST00000450533 EHMT2Q96KQ7 1210 aa35.51■■■■□ 3.28
TTC3-210ENST00000450533 BAZ1AQ9NRL2 1556 aaPredicted RBP35.5■■■■□ 3.27
TTC3-210ENST00000450533 UNC13AQ9UPW8 1703 aa35.3■■■■□ 3.24
TTC3-210ENST00000450533 SMARCA4P51532 1647 aa35.23■■■■□ 3.23
TTC3-210ENST00000450533 EIF4G1Q04637 1599 aaKnown RBP35.21■■■■□ 3.23
TTC3-210ENST00000450533 TOP2AP11388 1531 aaKnown RBP35.17■■■■□ 3.22
TTC3-210ENST00000450533 CCDC88BA6NC98 1476 aa35.06■■■■□ 3.2
TTC3-210ENST00000450533 PABPN1Q86U42 306 aaKnown RBP eCLIP35.01■■■■□ 3.2
TTC3-210ENST00000450533 SMARCA2P51531 1590 aa35■■■■□ 3.19
TTC3-210ENST00000450533 ABCC8Q09428 1581 aa34.98■■■■□ 3.19
TTC3-210ENST00000450533 BICRAQ9NZM4 1560 aa34.86■■■■□ 3.17
TTC3-210ENST00000450533 ZEB1P37275 1124 aaPredicted RBP34.71■■■■□ 3.15
TTC3-210ENST00000450533 SOGA1O94964 1423 aa34.63■■■■□ 3.13
TTC3-210ENST00000450533 PEG3Q9GZU2 1588 aa34.5■■■■□ 3.11
TTC3-210ENST00000450533 RUSC2Q8N2Y8 1516 aa34.48■■■■□ 3.11
TTC3-210ENST00000450533 CEP162Q5TB80 1403 aa34.42■■■■□ 3.1
TTC3-210ENST00000450533 CSRNP3Q8WYN3 585 aa34.41■■■■□ 3.1
TTC3-210ENST00000450533 WRNQ14191 1432 aaPredicted RBP eCLIP34.37■■■■□ 3.09
TTC3-210ENST00000450533 ATAD2BQ9ULI0 1458 aa34.35■■■■□ 3.09
TTC3-210ENST00000450533 EEA1Q15075 1411 aa34.35■■■■□ 3.09
TTC3-210ENST00000450533 TTBK1Q5TCY1 1321 aaPredicted RBP34.34■■■■□ 3.09
TTC3-210ENST00000450533 TNIKQ9UKE5 1360 aa34.33■■■■□ 3.09
TTC3-210ENST00000450533 UBTFP17480 764 aaKnown RBP34.31■■■■□ 3.08
TTC3-210ENST00000450533 BAZ1BQ9UIG0 1483 aaKnown RBP34.27■■■■□ 3.08
TTC3-210ENST00000450533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.25■■■■□ 3.07
TTC3-210ENST00000450533 SYNJ1O43426 1573 aa34.21■■■■□ 3.07
TTC3-210ENST00000450533 GOLGA3Q08378 1498 aa34.16■■■■□ 3.06
TTC3-210ENST00000450533 CCER1Q8TC90 406 aaPredicted RBP34.13■■■■□ 3.05
TTC3-210ENST00000450533 CEP164Q9UPV0 1460 aa33.97■■■■□ 3.03
TTC3-210ENST00000450533 KIF21BO75037 1637 aa33.9■■■■□ 3.02
TTC3-210ENST00000450533 CLIP1P30622 1438 aa33.8■■■■□ 3
TTC3-210ENST00000450533 RAPGEF2Q9Y4G8 1499 aa33.78■■■■□ 3
TTC3-210ENST00000450533 TOP2BQ02880 1626 aa33.76■■■□□ 2.99
TTC3-210ENST00000450533 RANGAP1P46060 587 aaPredicted RBP33.73■■■□□ 2.99
TTC3-210ENST00000450533 NCAPD3P42695 1498 aa33.66■■■□□ 2.98
TTC3-210ENST00000450533 HMGXB3Q12766 1538 aa33.64■■■□□ 2.98
TTC3-210ENST00000450533 BIVM-ERCC5R4GMW8 1640 aa33.62■■■□□ 2.97
TTC3-210ENST00000450533 VPS8Q8N3P4 1428 aa33.62■■■□□ 2.97
TTC3-210ENST00000450533 HNRNPUL2Q1KMD3 747 aaKnown RBP33.53■■■□□ 2.96
TTC3-210ENST00000450533 APLP2Q06481 763 aa33.5■■■□□ 2.95
TTC3-210ENST00000450533 CUX1P39880 1505 aa33.48■■■□□ 2.95
TTC3-210ENST00000450533 PRXQ9BXM0 1461 aa33.42■■■□□ 2.94
TTC3-210ENST00000450533 CFTRP13569 1480 aa33.39■■■□□ 2.94
TTC3-210ENST00000450533 DIEXFQ68CQ4 756 aaKnown RBP33.38■■■□□ 2.93
TTC3-210ENST00000450533 ERICH3Q5RHP9 1530 aa33.37■■■□□ 2.93
TTC3-210ENST00000450533 SCAF1Q9H7N4 1312 aaKnown RBP33.31■■■□□ 2.92
TTC3-210ENST00000450533 KIF27Q86VH2 1401 aa33.3■■■□□ 2.92
TTC3-210ENST00000450533 ARAP1Q96P48 1450 aa33.25■■■□□ 2.91
TTC3-210ENST00000450533 ZNF316A6NFI3 1004 aaPredicted RBP33.14■■■□□ 2.9
TTC3-210ENST00000450533 KANK4Q5T7N3 995 aaPredicted RBP33.12■■■□□ 2.89
TTC3-210ENST00000450533 PRDM2Q13029 1718 aa33.07■■■□□ 2.88
TTC3-210ENST00000450533 CADPSQ9ULU8 1353 aa33.05■■■□□ 2.88
TTC3-210ENST00000450533 CUX2O14529 1486 aa33.03■■■□□ 2.88
TTC3-210ENST00000450533 NEUROD1Q13562 356 aa33.02■■■□□ 2.88
TTC3-210ENST00000450533 ACIN1Q9UKV3 1341 aaKnown RBP33.02■■■□□ 2.88
TTC3-210ENST00000450533 ARHGAP35Q9NRY4 1499 aa32.98■■■□□ 2.87
TTC3-210ENST00000450533 IGF1RP08069 1367 aa32.96■■■□□ 2.87
TTC3-210ENST00000450533 FGD5Q6ZNL6 1462 aa32.91■■■□□ 2.86
TTC3-210ENST00000450533 CC2D2AQ9P2K1 1620 aa32.9■■■□□ 2.86
TTC3-210ENST00000450533 CENPBP07199 599 aaPredicted RBP32.83■■■□□ 2.85
TTC3-210ENST00000450533 CARMIL1Q5VZK9 1371 aa32.82■■■□□ 2.84
TTC3-210ENST00000450533 RRBP1Q9P2E9 1410 aaKnown RBP32.8■■■□□ 2.84
TTC3-210ENST00000450533 DHX57Q6P158 1386 aaKnown RBP32.79■■■□□ 2.84
TTC3-210ENST00000450533 FANCD2Q9BXW9 1451 aa32.75■■■□□ 2.83
TTC3-210ENST00000450533 CCNB3Q8WWL7 1395 aa32.71■■■□□ 2.83
TTC3-210ENST00000450533 ITGAEP38570 1179 aa32.7■■■□□ 2.83
TTC3-210ENST00000450533 MIER1Q8N108 512 aa32.7■■■□□ 2.82
TTC3-210ENST00000450533 CLSPNQ9HAW4 1339 aa32.67■■■□□ 2.82
TTC3-210ENST00000450533 GTF3C3Q9Y5Q9 886 aa32.67■■■□□ 2.82
TTC3-210ENST00000450533 YTHDC1Q96MU7 727 aaKnown RBP32.66■■■□□ 2.82
TTC3-210ENST00000450533 RAD54L2Q9Y4B4 1467 aa32.62■■■□□ 2.81
TTC3-210ENST00000450533 P3H3Q8IVL6 736 aa32.6■■■□□ 2.81
TTC3-210ENST00000450533 TIAM1Q13009 1591 aa32.59■■■□□ 2.81
TTC3-210ENST00000450533 NESP48681 1621 aa32.59■■■□□ 2.81
TTC3-210ENST00000450533 DNMBPQ6XZF7 1577 aa32.55■■■□□ 2.8
TTC3-210ENST00000450533 TOPBP1Q92547 1522 aa32.52■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms