RNA–Protein interactions for RNA: ENST00000335387.9

RC3H2-201, Transcript of ring finger and CCCH-type domains 2, humanhuman

TSL 1 (best) BASIC

Gene RC3H2, Length 3,081 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2-201ENST00000335387 NISCHQ9Y2I1 1504 aa28.44■■■□□ 2.14
RC3H2-201ENST00000335387 CCDC180Q9P1Z9 1646 aa24.54■■□□□ 1.52
RC3H2-201ENST00000335387 ZCCHC6Q5VYS8 1495 aaKnown RBP24.15■■□□□ 1.46
RC3H2-201ENST00000335387 DCAF1Q9Y4B6 1507 aa23.69■■□□□ 1.38
RC3H2-201ENST00000335387 SHROOM4Q9ULL8 1493 aa23.43■■□□□ 1.34
RC3H2-201ENST00000335387 ABCC9O60706 1549 aa23.26■■□□□ 1.31
RC3H2-201ENST00000335387 MYO15BQ96JP2 1530 aa23.08■■□□□ 1.29
RC3H2-201ENST00000335387 SUPT5HO00267 1087 aaKnown RBP22.94■■□□□ 1.26
RC3H2-201ENST00000335387 RB1CC1Q8TDY2 1594 aa22.71■■□□□ 1.23
RC3H2-201ENST00000335387 CHIC1Q5VXU3 224 aa22.7■■□□□ 1.22
RC3H2-201ENST00000335387 NACADO15069 1562 aa22.69■■□□□ 1.22
RC3H2-201ENST00000335387 DCAF8L2P0C7V8 631 aa22.51■■□□□ 1.19
RC3H2-201ENST00000335387 SCRIBQ14160 1630 aa22.43■■□□□ 1.18
RC3H2-201ENST00000335387 RSF1Q96T23 1441 aaPredicted RBP22.36■■□□□ 1.17
RC3H2-201ENST00000335387 UNC13AQ9UPW8 1703 aa22.06■■□□□ 1.12
RC3H2-201ENST00000335387 HRCP23327 699 aa22.03■■□□□ 1.12
RC3H2-201ENST00000335387 BAZ1AQ9NRL2 1556 aaPredicted RBP21.97■■□□□ 1.11
RC3H2-201ENST00000335387 MROH2BQ7Z745 1585 aa21.96■■□□□ 1.11
RC3H2-201ENST00000335387 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.1
RC3H2-201ENST00000335387 CECR2Q9BXF3 1484 aa21.92■■□□□ 1.1
RC3H2-201ENST00000335387 BICRAQ9NZM4 1560 aa21.89■■□□□ 1.09
RC3H2-201ENST00000335387 WIZO95785 1651 aa21.87■■□□□ 1.09
RC3H2-201ENST00000335387 LOC105371045A0A1W2PR82 267 aa21.73■■□□□ 1.07
RC3H2-201ENST00000335387 TOP2AP11388 1531 aaKnown RBP21.71■■□□□ 1.07
RC3H2-201ENST00000335387 SMARCA4P51532 1647 aa21.7■■□□□ 1.06
RC3H2-201ENST00000335387 PCGF6Q9BYE7 350 aa21.68■■□□□ 1.06
RC3H2-201ENST00000335387 TRIM26Q12899 539 aaPredicted RBP21.6■■□□□ 1.05
RC3H2-201ENST00000335387 TRIM41Q8WV44 630 aa21.59■■□□□ 1.05
RC3H2-201ENST00000335387 PEG3Q9GZU2 1588 aa21.54■■□□□ 1.04
RC3H2-201ENST00000335387 SMARCA2P51531 1590 aa21.54■■□□□ 1.04
RC3H2-201ENST00000335387 PABPN1Q86U42 306 aaKnown RBP eCLIP21.49■■□□□ 1.03
RC3H2-201ENST00000335387 DNAJC5BQ9UF47 199 aa21.48■■□□□ 1.03
RC3H2-201ENST00000335387 CCDC88BA6NC98 1476 aa21.4■■□□□ 1.02
RC3H2-201ENST00000335387 CC2D2AQ9P2K1 1620 aa21.26■□□□□ 0.99
RC3H2-201ENST00000335387 ZEB1P37275 1124 aaPredicted RBP21.25■□□□□ 0.99
RC3H2-201ENST00000335387 WRNQ14191 1432 aaPredicted RBP eCLIP21.24■□□□□ 0.99
RC3H2-201ENST00000335387 EEA1Q15075 1411 aa21.24■□□□□ 0.99
RC3H2-201ENST00000335387 ABCC8Q09428 1581 aa21.22■□□□□ 0.99
RC3H2-201ENST00000335387 PPARGC1BQ86YN6 1023 aaKnown RBP21.18■□□□□ 0.98
RC3H2-201ENST00000335387 FAM9AQ8IZU1 332 aaPredicted RBP21.06■□□□□ 0.96
RC3H2-201ENST00000335387 TNIKQ9UKE5 1360 aa21.05■□□□□ 0.96
RC3H2-201ENST00000335387 KIF21BO75037 1637 aa21.03■□□□□ 0.96
RC3H2-201ENST00000335387 ATAD2BQ9ULI0 1458 aa21.01■□□□□ 0.95
RC3H2-201ENST00000335387 SOGA1O94964 1423 aa20.97■□□□□ 0.95
RC3H2-201ENST00000335387 SYNJ1O43426 1573 aa20.96■□□□□ 0.95
RC3H2-201ENST00000335387 CEP162Q5TB80 1403 aa20.96■□□□□ 0.95
RC3H2-201ENST00000335387 GOLGA3Q08378 1498 aa20.92■□□□□ 0.94
RC3H2-201ENST00000335387 BIVM-ERCC5R4GMW8 1640 aa20.9■□□□□ 0.94
RC3H2-201ENST00000335387 BAZ1BQ9UIG0 1483 aaKnown RBP20.87■□□□□ 0.93
RC3H2-201ENST00000335387 RUSC2Q8N2Y8 1516 aa20.86■□□□□ 0.93
RC3H2-201ENST00000335387 HMGXB3Q12766 1538 aa20.86■□□□□ 0.93
RC3H2-201ENST00000335387 TOP2BQ02880 1626 aa20.85■□□□□ 0.93
RC3H2-201ENST00000335387 NCAPD3P42695 1498 aa20.85■□□□□ 0.93
RC3H2-201ENST00000335387 CEP164Q9UPV0 1460 aa20.83■□□□□ 0.93
RC3H2-201ENST00000335387 CSRNP3Q8WYN3 585 aa20.81■□□□□ 0.92
RC3H2-201ENST00000335387 PRDM2Q13029 1718 aa20.73■□□□□ 0.91
RC3H2-201ENST00000335387 ERICH3Q5RHP9 1530 aa20.69■□□□□ 0.9
RC3H2-201ENST00000335387 VPS8Q8N3P4 1428 aa20.59■□□□□ 0.89
RC3H2-201ENST00000335387 EHMT2Q96KQ7 1210 aa20.58■□□□□ 0.88
RC3H2-201ENST00000335387 PRXQ9BXM0 1461 aa20.56■□□□□ 0.88
RC3H2-201ENST00000335387 RAPGEF2Q9Y4G8 1499 aa20.54■□□□□ 0.88
RC3H2-201ENST00000335387 CLIP1P30622 1438 aa20.53■□□□□ 0.88
RC3H2-201ENST00000335387 CFTRP13569 1480 aa20.52■□□□□ 0.87
RC3H2-201ENST00000335387 CUX1P39880 1505 aa20.5■□□□□ 0.87
RC3H2-201ENST00000335387 CUX2O14529 1486 aa20.45■□□□□ 0.86
RC3H2-201ENST00000335387 UBTFP17480 764 aaKnown RBP20.43■□□□□ 0.86
RC3H2-201ENST00000335387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.42■□□□□ 0.86
RC3H2-201ENST00000335387 CCER1Q8TC90 406 aaPredicted RBP20.41■□□□□ 0.86
RC3H2-201ENST00000335387 LAMC3Q9Y6N6 1575 aa20.39■□□□□ 0.86
RC3H2-201ENST00000335387 ARAP1Q96P48 1450 aa20.38■□□□□ 0.85
RC3H2-201ENST00000335387 KIF27Q86VH2 1401 aa20.3■□□□□ 0.84
RC3H2-201ENST00000335387 MAP3K1Q13233 1512 aa20.26■□□□□ 0.83
RC3H2-201ENST00000335387 RRBP1Q9P2E9 1410 aaKnown RBP20.22■□□□□ 0.83
RC3H2-201ENST00000335387 ERCC6Q03468 1493 aa20.2■□□□□ 0.82
RC3H2-201ENST00000335387 CLSPNQ9HAW4 1339 aa20.19■□□□□ 0.82
RC3H2-201ENST00000335387 ARHGAP35Q9NRY4 1499 aa20.16■□□□□ 0.82
RC3H2-201ENST00000335387 PDS5BQ9NTI5 1447 aa20.16■□□□□ 0.82
RC3H2-201ENST00000335387 SCAF1Q9H7N4 1312 aaKnown RBP20.15■□□□□ 0.82
RC3H2-201ENST00000335387 CADPSQ9ULU8 1353 aa20.14■□□□□ 0.81
RC3H2-201ENST00000335387 THOC2Q8NI27 1593 aaKnown RBP20.13■□□□□ 0.81
RC3H2-201ENST00000335387 DIEXFQ68CQ4 756 aaKnown RBP20.12■□□□□ 0.81
RC3H2-201ENST00000335387 ZNF316A6NFI3 1004 aaPredicted RBP20.09■□□□□ 0.81
RC3H2-201ENST00000335387 CFAP43Q8NDM7 1665 aa20.09■□□□□ 0.81
RC3H2-201ENST00000335387 IGF1RP08069 1367 aa20.06■□□□□ 0.8
RC3H2-201ENST00000335387 ACIN1Q9UKV3 1341 aaKnown RBP20.05■□□□□ 0.8
RC3H2-201ENST00000335387 TIAM1Q13009 1591 aa20.05■□□□□ 0.8
RC3H2-201ENST00000335387 DNMBPQ6XZF7 1577 aa20.05■□□□□ 0.8
RC3H2-201ENST00000335387 FGD5Q6ZNL6 1462 aa20.04■□□□□ 0.8
RC3H2-201ENST00000335387 WDR97A6NE52 1622 aa20.03■□□□□ 0.8
RC3H2-201ENST00000335387 APLP2Q06481 763 aa20.02■□□□□ 0.8
RC3H2-201ENST00000335387 NESP48681 1621 aa20.02■□□□□ 0.8
RC3H2-201ENST00000335387 CUL7Q14999 1698 aa20.01■□□□□ 0.79
RC3H2-201ENST00000335387 DHX57Q6P158 1386 aaKnown RBP20■□□□□ 0.79
RC3H2-201ENST00000335387 KIF21AQ7Z4S6 1674 aa19.99■□□□□ 0.79
RC3H2-201ENST00000335387 PELP1Q8IZL8 1130 aaKnown RBP19.99■□□□□ 0.79
RC3H2-201ENST00000335387 TTBK1Q5TCY1 1321 aaPredicted RBP19.99■□□□□ 0.79
RC3H2-201ENST00000335387 ABCA10Q8WWZ4 1543 aa19.99■□□□□ 0.79
RC3H2-201ENST00000335387 WDR62O43379 1518 aa19.97■□□□□ 0.79
RC3H2-201ENST00000335387 EFCAB5A4FU69 1503 aa19.96■□□□□ 0.79
RC3H2-201ENST00000335387 CTTNBP2Q8WZ74 1663 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms