RNA–Protein interactions for RNA: ENST00000473684.5

TMEM39A-206, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 3,043 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-206ENST00000473684 CHIC1Q5VXU3 224 aa15.58■□□□□ 0.09
TMEM39A-206ENST00000473684 AEBP2Q6ZN18 517 aaPredicted RBP15.54■□□□□ 0.08
TMEM39A-206ENST00000473684 PHF23Q9BUL5 403 aaPredicted RBP13.77□□□□□ -0.2
TMEM39A-206ENST00000473684 SENP3Q9H4L4 574 aaPredicted RBP13.08□□□□□ -0.32
TMEM39A-206ENST00000473684 PLPPR3Q6T4P5 718 aa12.83□□□□□ -0.36
TMEM39A-206ENST00000473684 FOXD1Q16676 465 aa12.11□□□□□ -0.47
TMEM39A-206ENST00000473684 ADRA2BP18089 450 aa12.03□□□□□ -0.48
TMEM39A-206ENST00000473684 PPP6R1Q9UPN7 881 aa12□□□□□ -0.49
TMEM39A-206ENST00000473684 KCNA4P22459 653 aa11.6□□□□□ -0.55
TMEM39A-206ENST00000473684 PIAS4Q8N2W9 510 aaPredicted RBP11.5□□□□□ -0.57
TMEM39A-206ENST00000473684 PPP4R3CPQ6ZMV5 832 aa11.36□□□□□ -0.59
TMEM39A-206ENST00000473684 EHMT2Q96KQ7 1210 aa11.27□□□□□ -0.6
TMEM39A-206ENST00000473684 NCBP3Q53F19 620 aaKnown RBP11.17□□□□□ -0.62
TMEM39A-206ENST00000473684 SLC4A1APQ9BWU0 796 aaKnown RBP11.1□□□□□ -0.63
TMEM39A-206ENST00000473684 NPM3O75607 178 aaKnown RBP11.04□□□□□ -0.64
TMEM39A-206ENST00000473684 CSRNP3Q8WYN3 585 aa10.98□□□□□ -0.65
TMEM39A-206ENST00000473684 MSH5O43196 834 aa10.98□□□□□ -0.65
TMEM39A-206ENST00000473684 CNKSR2Q8WXI2 1034 aa10.95□□□□□ -0.66
TMEM39A-206ENST00000473684 SCAF1Q9H7N4 1312 aaKnown RBP10.95□□□□□ -0.66
TMEM39A-206ENST00000473684 MAPK8IP2Q13387 824 aaPredicted RBP10.77□□□□□ -0.69
TMEM39A-206ENST00000473684 ZBTB22O15209 634 aa10.71□□□□□ -0.7
TMEM39A-206ENST00000473684 DNAJC5BQ9UF47 199 aa10.68□□□□□ -0.7
TMEM39A-206ENST00000473684 RNF216Q9NWF9 866 aaPredicted RBP10.64□□□□□ -0.71
TMEM39A-206ENST00000473684 FOXD4L1Q9NU39 408 aa10.54□□□□□ -0.72
TMEM39A-206ENST00000473684 DMRT2Q9Y5R5 561 aa10.53□□□□□ -0.72
TMEM39A-206ENST00000473684 HOXD11P31277 338 aaPredicted RBP10.49□□□□□ -0.73
TMEM39A-206ENST00000473684 SLC4A2P04920 1241 aa10.33□□□□□ -0.76
TMEM39A-206ENST00000473684 MYCNP04198 464 aaPredicted RBP10.17□□□□□ -0.78
TMEM39A-206ENST00000473684 ATXN8OSP0DMR3 200 aa10.14□□□□□ -0.79
TMEM39A-206ENST00000473684 DCAF8L1A6NGE4 600 aa10□□□□□ -0.81
TMEM39A-206ENST00000473684 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.96□□□□□ -0.82
TMEM39A-206ENST00000473684 ATF5Q9Y2D1 282 aaPredicted RBP9.9□□□□□ -0.82
TMEM39A-206ENST00000473684 U3KPZ7 1027 aaPredicted RBP9.88□□□□□ -0.83
TMEM39A-206ENST00000473684 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.87□□□□□ -0.83
TMEM39A-206ENST00000473684 FKBP8Q14318 412 aa9.87□□□□□ -0.83
TMEM39A-206ENST00000473684 HNRNPUL2Q1KMD3 747 aaKnown RBP9.87□□□□□ -0.83
TMEM39A-206ENST00000473684 SAMD1Q6SPF0 538 aaPredicted RBP9.86□□□□□ -0.83
TMEM39A-206ENST00000473684 RTN4Q9NQC3 1192 aaKnown RBP9.76□□□□□ -0.85
TMEM39A-206ENST00000473684 AMER1Q5JTC6 1135 aaPredicted RBP9.75□□□□□ -0.85
TMEM39A-206ENST00000473684 ZNF219Q9P2Y4 722 aaPredicted RBP9.67□□□□□ -0.86
TMEM39A-206ENST00000473684 APLP2Q06481 763 aa9.65□□□□□ -0.86
TMEM39A-206ENST00000473684 NISCHQ9Y2I1 1504 aa9.56□□□□□ -0.88
TMEM39A-206ENST00000473684 SLC24A1O60721 1099 aa9.5□□□□□ -0.89
TMEM39A-206ENST00000473684 MKRN4PQ13434 485 aaPredicted RBP9.49□□□□□ -0.89
TMEM39A-206ENST00000473684 RNF39Q9H2S5 420 aa9.47□□□□□ -0.89
TMEM39A-206ENST00000473684 SPINK5Q9NQ38 1064 aaPredicted RBP9.47□□□□□ -0.89
TMEM39A-206ENST00000473684 SPDYE4A6NLX3 237 aa9.46□□□□□ -0.9
TMEM39A-206ENST00000473684 TRHP20396 242 aaPredicted RBP9.44□□□□□ -0.9
TMEM39A-206ENST00000473684 FBLN2P98095 1184 aa9.4□□□□□ -0.9
TMEM39A-206ENST00000473684 POLA2Q14181 598 aa9.4□□□□□ -0.9
TMEM39A-206ENST00000473684 PROM2Q8N271 834 aa9.4□□□□□ -0.9
TMEM39A-206ENST00000473684 FBXO3Q9UK99 471 aa9.39□□□□□ -0.91
TMEM39A-206ENST00000473684 CAPN15O75808 1086 aa9.38□□□□□ -0.91
TMEM39A-206ENST00000473684 C1QBPQ07021 282 aaKnown RBP9.37□□□□□ -0.91
TMEM39A-206ENST00000473684 VASPP50552 380 aaPredicted RBP9.27□□□□□ -0.93
TMEM39A-206ENST00000473684 ZBTB12Q9Y330 459 aaPredicted RBP9.26□□□□□ -0.93
TMEM39A-206ENST00000473684 CCDC180Q9P1Z9 1646 aa9.26□□□□□ -0.93
TMEM39A-206ENST00000473684 POTEDQ86YR6 584 aa9.26□□□□□ -0.93
TMEM39A-206ENST00000473684 ABCB7O75027 752 aa9.25□□□□□ -0.93
TMEM39A-206ENST00000473684 IFNLR1Q8IU57 520 aaPredicted RBP9.2□□□□□ -0.94
TMEM39A-206ENST00000473684 DSG3P32926 999 aa9.16□□□□□ -0.94
TMEM39A-206ENST00000473684 PELP1Q8IZL8 1130 aaKnown RBP9.15□□□□□ -0.94
TMEM39A-206ENST00000473684 ZNF692Q9BU19 519 aaPredicted RBP9.09□□□□□ -0.95
TMEM39A-206ENST00000473684 OSCARQ8IYS5 282 aa9.07□□□□□ -0.96
TMEM39A-206ENST00000473684 SPDYE2BA6NHP3 402 aa9.06□□□□□ -0.96
TMEM39A-206ENST00000473684 SPDYE6P0CI01 402 aa9.06□□□□□ -0.96
TMEM39A-206ENST00000473684 SPDYE2Q495Y8 402 aa9.06□□□□□ -0.96
TMEM39A-206ENST00000473684 SSUH2Q9Y2M2 353 aa9.06□□□□□ -0.96
TMEM39A-206ENST00000473684 PKD2Q13563 968 aa9.06□□□□□ -0.96
TMEM39A-206ENST00000473684 STAG3Q9UJ98 1225 aa9.03□□□□□ -0.96
TMEM39A-206ENST00000473684 MYT1Q01538 1121 aa9.02□□□□□ -0.96
TMEM39A-206ENST00000473684 PLCB2Q00722 1185 aa9.01□□□□□ -0.97
TMEM39A-206ENST00000473684 SPOCK2Q92563 424 aa8.99□□□□□ -0.97
TMEM39A-206ENST00000473684 PABPN1Q86U42 306 aaKnown RBP eCLIP8.99□□□□□ -0.97
TMEM39A-206ENST00000473684 KLHL34Q8N239 644 aa8.98□□□□□ -0.97
TMEM39A-206ENST00000473684 DCAF8L2P0C7V8 631 aa8.97□□□□□ -0.97
TMEM39A-206ENST00000473684 PLCD3Q8N3E9 789 aa8.93□□□□□ -0.98
TMEM39A-206ENST00000473684 MIER1Q8N108 512 aa8.9□□□□□ -0.98
TMEM39A-206ENST00000473684 ECM2O94769 699 aaPredicted RBP8.89□□□□□ -0.99
TMEM39A-206ENST00000473684 CACNB1Q02641 598 aaPredicted RBP8.87□□□□□ -0.99
TMEM39A-206ENST00000473684 HAP1P54257 671 aaPredicted RBP8.86□□□□□ -0.99
TMEM39A-206ENST00000473684 RGL2O15211 777 aa8.81□□□□□ -1
TMEM39A-206ENST00000473684 NPM1P06748 294 aaKnown RBP eCLIP8.81□□□□□ -1
TMEM39A-206ENST00000473684 BBXQ8WY36 941 aaPredicted RBP8.81□□□□□ -1
TMEM39A-206ENST00000473684 ZBTB47Q9UFB7 747 aaPredicted RBP8.81□□□□□ -1
TMEM39A-206ENST00000473684 PLEKHG5O94827 1062 aa8.8□□□□□ -1
TMEM39A-206ENST00000473684 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.77□□□□□ -1.01
TMEM39A-206ENST00000473684 VSIG10Q8N0Z9 540 aa8.75□□□□□ -1.01
TMEM39A-206ENST00000473684 CIZ1Q9ULV3 898 aaPredicted RBP8.75□□□□□ -1.01
TMEM39A-206ENST00000473684 PAXIP1Q6ZW49 1069 aaPredicted RBP8.72□□□□□ -1.01
TMEM39A-206ENST00000473684 TRIM41Q8WV44 630 aa8.71□□□□□ -1.02
TMEM39A-206ENST00000473684 MYO15BQ96JP2 1530 aa8.7□□□□□ -1.02
TMEM39A-206ENST00000473684 CFAP44Q96MT7 982 aa8.69□□□□□ -1.02
TMEM39A-206ENST00000473684 AKT1S1Q96B36 256 aa8.69□□□□□ -1.02
TMEM39A-206ENST00000473684 SPDYE1Q8NFV5 336 aaPredicted RBP8.68□□□□□ -1.02
TMEM39A-206ENST00000473684 RBM42Q9BTD8 480 aaKnown RBP8.68□□□□□ -1.02
TMEM39A-206ENST00000473684 TTBK1Q5TCY1 1321 aaPredicted RBP8.67□□□□□ -1.02
TMEM39A-206ENST00000473684 SHROOM4Q9ULL8 1493 aa8.67□□□□□ -1.02
TMEM39A-206ENST00000473684 NUBP1P53384 320 aa8.67□□□□□ -1.02
TMEM39A-206ENST00000473684 CHGAP10645 457 aaKnown RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms