Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC34.89■■■■□ 3.18
PTCD1O75127 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC34.89■■■■□ 3.18
PTCD1O75127 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
PTCD1O75127 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC34.85■■■■□ 3.17
PTCD1O75127 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
PTCD1O75127 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC34.84■■■■□ 3.17
PTCD1O75127 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
PTCD1O75127 AC108673.1-201ENST00000510422 1159 ntBASIC34.82■■■■□ 3.16
PTCD1O75127 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
PTCD1O75127 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC34.81■■■■□ 3.16
PTCD1O75127 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
PTCD1O75127 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
PTCD1O75127 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
PTCD1O75127 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.8■■■■□ 3.16
PTCD1O75127 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
PTCD1O75127 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
PTCD1O75127 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
PTCD1O75127 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
PTCD1O75127 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC34.78■■■■□ 3.16
PTCD1O75127 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC34.77■■■■□ 3.16
PTCD1O75127 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
PTCD1O75127 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC34.76■■■■□ 3.16
PTCD1O75127 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.16
PTCD1O75127 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC34.76■■■■□ 3.16
PTCD1O75127 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC34.75■■■■□ 3.15
PTCD1O75127 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
PTCD1O75127 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
PTCD1O75127 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC34.74■■■■□ 3.15
PTCD1O75127 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
PTCD1O75127 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
PTCD1O75127 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC34.73■■■■□ 3.15
PTCD1O75127 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC34.73■■■■□ 3.15
PTCD1O75127 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC34.73■■■■□ 3.15
PTCD1O75127 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
PTCD1O75127 MIR4449-201ENST00000578365 66 ntBASIC34.7■■■■□ 3.15
PTCD1O75127 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC34.7■■■■□ 3.15
PTCD1O75127 MACF1-219ENST00000484793 834 ntTSL 2 BASIC34.69■■■■□ 3.14
PTCD1O75127 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC34.69■■■■□ 3.14
PTCD1O75127 RNF166-209ENST00000567844 633 ntTSL 5 BASIC34.69■■■■□ 3.14
PTCD1O75127 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC34.68■■■■□ 3.14
PTCD1O75127 MIR639-201ENST00000384974 98 ntBASIC34.68■■■■□ 3.14
PTCD1O75127 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC34.68■■■■□ 3.14
PTCD1O75127 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
PTCD1O75127 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC34.67■■■■□ 3.14
PTCD1O75127 AC016575.1-201ENST00000607026 382 ntBASIC34.65■■■■□ 3.14
PTCD1O75127 MIR3648-2-201ENST00000581792 180 ntBASIC34.64■■■■□ 3.14
PTCD1O75127 MIR3648-1-201ENST00000615959 180 ntBASIC34.64■■■■□ 3.14
PTCD1O75127 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
PTCD1O75127 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC34.62■■■■□ 3.13
PTCD1O75127 GDI1-215ENST00000630693 786 ntTSL 4 BASIC34.62■■■■□ 3.13
PTCD1O75127 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
PTCD1O75127 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC34.61■■■■□ 3.13
PTCD1O75127 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
PTCD1O75127 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
PTCD1O75127 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC34.59■■■■□ 3.13
PTCD1O75127 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC34.59■■■■□ 3.13
PTCD1O75127 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
PTCD1O75127 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
PTCD1O75127 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC34.57■■■■□ 3.13
PTCD1O75127 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
PTCD1O75127 DUX4L11-201ENST00000611504 1267 ntBASIC34.57■■■■□ 3.12
PTCD1O75127 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC34.57■■■■□ 3.12
PTCD1O75127 DUX4L12-201ENST00000614593 1267 ntBASIC34.57■■■■□ 3.12
PTCD1O75127 DUX4L14-201ENST00000621227 1267 ntBASIC34.57■■■■□ 3.12
PTCD1O75127 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC34.56■■■■□ 3.12
PTCD1O75127 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC34.53■■■■□ 3.12
PTCD1O75127 LINC01971-201ENST00000617888 1048 ntBASIC34.53■■■■□ 3.12
PTCD1O75127 CR559946.2-201ENST00000623684 991 ntBASIC34.52■■■■□ 3.12
PTCD1O75127 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC34.52■■■■□ 3.12
PTCD1O75127 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
PTCD1O75127 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC34.5■■■■□ 3.11
PTCD1O75127 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC34.48■■■■□ 3.11
PTCD1O75127 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC34.47■■■■□ 3.11
PTCD1O75127 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC34.47■■■■□ 3.11
PTCD1O75127 AC120057.4-201ENST00000624722 1615 ntBASIC34.46■■■■□ 3.11
PTCD1O75127 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
PTCD1O75127 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
PTCD1O75127 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC34.45■■■■□ 3.11
PTCD1O75127 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.45■■■■□ 3.11
PTCD1O75127 CALM3-209ENST00000597743 577 ntTSL 4 BASIC34.45■■■■□ 3.11
PTCD1O75127 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC34.45■■■■□ 3.11
PTCD1O75127 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC34.44■■■■□ 3.1
PTCD1O75127 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC34.44■■■■□ 3.1
PTCD1O75127 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
PTCD1O75127 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC34.42■■■■□ 3.1
PTCD1O75127 AGPS-202ENST00000409888 815 ntTSL 4 BASIC34.42■■■■□ 3.1
PTCD1O75127 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC34.42■■■■□ 3.1
PTCD1O75127 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
PTCD1O75127 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC34.41■■■■□ 3.1
PTCD1O75127 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
PTCD1O75127 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
PTCD1O75127 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC34.39■■■■□ 3.1
PTCD1O75127 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC34.39■■■■□ 3.1
PTCD1O75127 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC34.39■■■■□ 3.1
PTCD1O75127 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC34.37■■■■□ 3.09
PTCD1O75127 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC34.37■■■■□ 3.09
PTCD1O75127 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
PTCD1O75127 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC34.35■■■■□ 3.09
PTCD1O75127 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC34.35■■■■□ 3.09
PTCD1O75127 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC34.35■■■■□ 3.09
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms