Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 WASH5P-204ENST00000632292 975 ntBASIC25.57■■□□□ 1.68
PTCHD1Q96NR3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC25.56■■□□□ 1.68
PTCHD1Q96NR3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PTCHD1Q96NR3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PTCHD1Q96NR3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.55■■□□□ 1.68
PTCHD1Q96NR3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
PTCHD1Q96NR3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTCHD1Q96NR3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.54■■□□□ 1.68
PTCHD1Q96NR3 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
PTCHD1Q96NR3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTCHD1Q96NR3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
PTCHD1Q96NR3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
PTCHD1Q96NR3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.52■■□□□ 1.68
PTCHD1Q96NR3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PTCHD1Q96NR3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PTCHD1Q96NR3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
PTCHD1Q96NR3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.5■■□□□ 1.67
PTCHD1Q96NR3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTCHD1Q96NR3 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTCHD1Q96NR3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PTCHD1Q96NR3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
PTCHD1Q96NR3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.48■■□□□ 1.67
PTCHD1Q96NR3 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
PTCHD1Q96NR3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
PTCHD1Q96NR3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PTCHD1Q96NR3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCHD1Q96NR3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PTCHD1Q96NR3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
PTCHD1Q96NR3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
PTCHD1Q96NR3 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.67
PTCHD1Q96NR3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PTCHD1Q96NR3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
PTCHD1Q96NR3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
PTCHD1Q96NR3 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
PTCHD1Q96NR3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
PTCHD1Q96NR3 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCHD1Q96NR3 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PTCHD1Q96NR3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PTCHD1Q96NR3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTCHD1Q96NR3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PTCHD1Q96NR3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PTCHD1Q96NR3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.37■■□□□ 1.65
PTCHD1Q96NR3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PTCHD1Q96NR3 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.36■■□□□ 1.65
PTCHD1Q96NR3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
PTCHD1Q96NR3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
PTCHD1Q96NR3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.35■■□□□ 1.65
PTCHD1Q96NR3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC25.35■■□□□ 1.65
PTCHD1Q96NR3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
PTCHD1Q96NR3 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.32■■□□□ 1.64
PTCHD1Q96NR3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.32■■□□□ 1.64
PTCHD1Q96NR3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.31■■□□□ 1.64
PTCHD1Q96NR3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
PTCHD1Q96NR3 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
PTCHD1Q96NR3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PTCHD1Q96NR3 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC25.29■■□□□ 1.64
PTCHD1Q96NR3 MIR762-201ENST00000390236 83 ntBASIC25.28■■□□□ 1.64
PTCHD1Q96NR3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PTCHD1Q96NR3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
PTCHD1Q96NR3 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.26■■□□□ 1.63
PTCHD1Q96NR3 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC25.26■■□□□ 1.63
PTCHD1Q96NR3 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCHD1Q96NR3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PTCHD1Q96NR3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.25■■□□□ 1.63
PTCHD1Q96NR3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC25.25■■□□□ 1.63
PTCHD1Q96NR3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PTCHD1Q96NR3 AP006261.1-201ENST00000584783 668 ntBASIC25.23■■□□□ 1.63
PTCHD1Q96NR3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.23■■□□□ 1.63
PTCHD1Q96NR3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PTCHD1Q96NR3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
PTCHD1Q96NR3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PTCHD1Q96NR3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
PTCHD1Q96NR3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PTCHD1Q96NR3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
PTCHD1Q96NR3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.19■■□□□ 1.62
PTCHD1Q96NR3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD1Q96NR3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD1Q96NR3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD1Q96NR3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.19■■□□□ 1.62
PTCHD1Q96NR3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PTCHD1Q96NR3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
PTCHD1Q96NR3 AC005559.1-201ENST00000589661 871 ntBASIC25.18■■□□□ 1.62
PTCHD1Q96NR3 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PTCHD1Q96NR3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PTCHD1Q96NR3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PTCHD1Q96NR3 MIR3665-201ENST00000578708 105 ntBASIC25.17■■□□□ 1.62
PTCHD1Q96NR3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 AL162393.1-201ENST00000437852 946 ntBASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PTCHD1Q96NR3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCHD1Q96NR3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PTCHD1Q96NR3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.15■■□□□ 1.62
PTCHD1Q96NR3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.15■■□□□ 1.62
PTCHD1Q96NR3 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PTCHD1Q96NR3 AL161658.1-201ENST00000623641 1967 ntBASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms