Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC30.55■■■□□ 2.48
CCDC60Q8IWA6 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.54■■■□□ 2.48
CCDC60Q8IWA6 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.54■■■□□ 2.48
CCDC60Q8IWA6 AL162393.1-201ENST00000437852 946 ntBASIC30.53■■■□□ 2.48
CCDC60Q8IWA6 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.52■■■□□ 2.48
CCDC60Q8IWA6 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.51■■■□□ 2.47
CCDC60Q8IWA6 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC60Q8IWA6 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CCDC60Q8IWA6 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC60Q8IWA6 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.48■■■□□ 2.47
CCDC60Q8IWA6 AP006261.1-201ENST00000584783 668 ntBASIC30.48■■■□□ 2.47
CCDC60Q8IWA6 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC60Q8IWA6 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
CCDC60Q8IWA6 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CCDC60Q8IWA6 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.46■■■□□ 2.47
CCDC60Q8IWA6 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CCDC60Q8IWA6 MIR762-201ENST00000390236 83 ntBASIC30.44■■■□□ 2.46
CCDC60Q8IWA6 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.44■■■□□ 2.46
CCDC60Q8IWA6 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CCDC60Q8IWA6 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CCDC60Q8IWA6 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CCDC60Q8IWA6 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.4■■■□□ 2.46
CCDC60Q8IWA6 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC60Q8IWA6 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC60Q8IWA6 AC120057.4-201ENST00000624722 1615 ntBASIC30.37■■■□□ 2.45
CCDC60Q8IWA6 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.36■■■□□ 2.45
CCDC60Q8IWA6 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC60Q8IWA6 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.35■■■□□ 2.45
CCDC60Q8IWA6 DUX4L28-201ENST00000623687 678 ntBASIC30.35■■■□□ 2.45
CCDC60Q8IWA6 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC60Q8IWA6 MIR3665-201ENST00000578708 105 ntBASIC30.33■■■□□ 2.45
CCDC60Q8IWA6 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.32■■■□□ 2.44
CCDC60Q8IWA6 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC60Q8IWA6 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC60Q8IWA6 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.3■■■□□ 2.44
CCDC60Q8IWA6 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC60Q8IWA6 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC60Q8IWA6 AC005559.1-201ENST00000589661 871 ntBASIC30.29■■■□□ 2.44
CCDC60Q8IWA6 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.29■■■□□ 2.44
CCDC60Q8IWA6 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC60Q8IWA6 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.27■■■□□ 2.44
CCDC60Q8IWA6 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC60Q8IWA6 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC60Q8IWA6 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
CCDC60Q8IWA6 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC60Q8IWA6 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC60Q8IWA6 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
CCDC60Q8IWA6 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.24■■■□□ 2.43
CCDC60Q8IWA6 AC087741.3-201ENST00000624270 1347 ntBASIC30.23■■■□□ 2.43
CCDC60Q8IWA6 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC60Q8IWA6 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC60Q8IWA6 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC60Q8IWA6 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC60Q8IWA6 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC60Q8IWA6 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC60Q8IWA6 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC60Q8IWA6 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC60Q8IWA6 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC60Q8IWA6 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC60Q8IWA6 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC60Q8IWA6 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC60Q8IWA6 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC60Q8IWA6 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.15■■■□□ 2.42
CCDC60Q8IWA6 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC60Q8IWA6 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC60Q8IWA6 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.13■■■□□ 2.41
CCDC60Q8IWA6 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CCDC60Q8IWA6 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC60Q8IWA6 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
CCDC60Q8IWA6 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
CCDC60Q8IWA6 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CCDC60Q8IWA6 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC60Q8IWA6 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
CCDC60Q8IWA6 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.11■■■□□ 2.41
CCDC60Q8IWA6 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CCDC60Q8IWA6 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.09■■■□□ 2.41
CCDC60Q8IWA6 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.09■■■□□ 2.41
CCDC60Q8IWA6 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.07■■■□□ 2.4
CCDC60Q8IWA6 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CCDC60Q8IWA6 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC60Q8IWA6 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
CCDC60Q8IWA6 AC044849.2-201ENST00000606596 710 ntBASIC30.05■■■□□ 2.4
CCDC60Q8IWA6 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
CCDC60Q8IWA6 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.04■■■□□ 2.4
CCDC60Q8IWA6 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.04■■■□□ 2.4
CCDC60Q8IWA6 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC60Q8IWA6 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CCDC60Q8IWA6 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
CCDC60Q8IWA6 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CCDC60Q8IWA6 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30■■■□□ 2.39
CCDC60Q8IWA6 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.98■■■□□ 2.39
CCDC60Q8IWA6 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC29.97■■■□□ 2.39
CCDC60Q8IWA6 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.97■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms