Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
SH3RF1Q7Z6J0 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SH3RF1Q7Z6J0 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SH3RF1Q7Z6J0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SH3RF1Q7Z6J0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
SH3RF1Q7Z6J0 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SH3RF1Q7Z6J0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.61
SH3RF1Q7Z6J0 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SH3RF1Q7Z6J0 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.31■■■□□ 2.6
SH3RF1Q7Z6J0 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SH3RF1Q7Z6J0 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
SH3RF1Q7Z6J0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.28■■■□□ 2.6
SH3RF1Q7Z6J0 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.28■■■□□ 2.6
SH3RF1Q7Z6J0 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.28■■■□□ 2.6
SH3RF1Q7Z6J0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.27■■■□□ 2.6
SH3RF1Q7Z6J0 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.6
SH3RF1Q7Z6J0 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
SH3RF1Q7Z6J0 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.26■■■□□ 2.59
SH3RF1Q7Z6J0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.26■■■□□ 2.59
SH3RF1Q7Z6J0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.25■■■□□ 2.59
SH3RF1Q7Z6J0 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
SH3RF1Q7Z6J0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SH3RF1Q7Z6J0 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SH3RF1Q7Z6J0 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
SH3RF1Q7Z6J0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SH3RF1Q7Z6J0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
SH3RF1Q7Z6J0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SH3RF1Q7Z6J0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.22■■■□□ 2.59
SH3RF1Q7Z6J0 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
SH3RF1Q7Z6J0 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.21■■■□□ 2.59
SH3RF1Q7Z6J0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.21■■■□□ 2.59
SH3RF1Q7Z6J0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
SH3RF1Q7Z6J0 MIR3665-201ENST00000578708 105 ntBASIC31.21■■■□□ 2.59
SH3RF1Q7Z6J0 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
SH3RF1Q7Z6J0 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SH3RF1Q7Z6J0 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.2■■■□□ 2.59
SH3RF1Q7Z6J0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.19■■■□□ 2.58
SH3RF1Q7Z6J0 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.18■■■□□ 2.58
SH3RF1Q7Z6J0 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SH3RF1Q7Z6J0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
SH3RF1Q7Z6J0 AC087741.3-201ENST00000624270 1347 ntBASIC31.16■■■□□ 2.58
SH3RF1Q7Z6J0 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
SH3RF1Q7Z6J0 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.15■■■□□ 2.58
SH3RF1Q7Z6J0 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
SH3RF1Q7Z6J0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.11■■■□□ 2.57
SH3RF1Q7Z6J0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.11■■■□□ 2.57
SH3RF1Q7Z6J0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SH3RF1Q7Z6J0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
SH3RF1Q7Z6J0 DUX4L28-201ENST00000623687 678 ntBASIC31.11■■■□□ 2.57
SH3RF1Q7Z6J0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
SH3RF1Q7Z6J0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.1■■■□□ 2.57
SH3RF1Q7Z6J0 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
SH3RF1Q7Z6J0 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
SH3RF1Q7Z6J0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.07■■■□□ 2.56
SH3RF1Q7Z6J0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.07■■■□□ 2.56
SH3RF1Q7Z6J0 HLA-V-202ENST00000446817 847 ntBASIC31.06■■■□□ 2.56
SH3RF1Q7Z6J0 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.06■■■□□ 2.56
SH3RF1Q7Z6J0 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.05■■■□□ 2.56
SH3RF1Q7Z6J0 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
SH3RF1Q7Z6J0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
SH3RF1Q7Z6J0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
SH3RF1Q7Z6J0 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
SH3RF1Q7Z6J0 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.01■■■□□ 2.56
SH3RF1Q7Z6J0 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
SH3RF1Q7Z6J0 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31■■■□□ 2.55
SH3RF1Q7Z6J0 AC120057.4-201ENST00000624722 1615 ntBASIC31■■■□□ 2.55
SH3RF1Q7Z6J0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.99■■■□□ 2.55
SH3RF1Q7Z6J0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.99■■■□□ 2.55
SH3RF1Q7Z6J0 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
SH3RF1Q7Z6J0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
SH3RF1Q7Z6J0 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.98■■■□□ 2.55
SH3RF1Q7Z6J0 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SH3RF1Q7Z6J0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
SH3RF1Q7Z6J0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
SH3RF1Q7Z6J0 MIR762-201ENST00000390236 83 ntBASIC30.96■■■□□ 2.55
SH3RF1Q7Z6J0 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.96■■■□□ 2.55
SH3RF1Q7Z6J0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.96■■■□□ 2.55
SH3RF1Q7Z6J0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.55
SH3RF1Q7Z6J0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
SH3RF1Q7Z6J0 AC044849.2-201ENST00000606596 710 ntBASIC30.95■■■□□ 2.55
SH3RF1Q7Z6J0 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.95■■■□□ 2.54
SH3RF1Q7Z6J0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
SH3RF1Q7Z6J0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
SH3RF1Q7Z6J0 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.93■■■□□ 2.54
SH3RF1Q7Z6J0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.92■■■□□ 2.54
SH3RF1Q7Z6J0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.92■■■□□ 2.54
SH3RF1Q7Z6J0 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
SH3RF1Q7Z6J0 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
SH3RF1Q7Z6J0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.89■■■□□ 2.54
SH3RF1Q7Z6J0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
SH3RF1Q7Z6J0 AC005559.1-201ENST00000589661 871 ntBASIC30.88■■■□□ 2.53
SH3RF1Q7Z6J0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SH3RF1Q7Z6J0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC30.87■■■□□ 2.53
SH3RF1Q7Z6J0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SH3RF1Q7Z6J0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SH3RF1Q7Z6J0 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
SH3RF1Q7Z6J0 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
SH3RF1Q7Z6J0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SH3RF1Q7Z6J0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.84■■■□□ 2.53
SH3RF1Q7Z6J0 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms