Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBR4Q5T4S7 CR559946.2-201ENST00000623684 991 ntBASIC15.81■□□□□ 0.12
UBR4Q5T4S7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBR4Q5T4S7 AL133380.1-201ENST00000506013 324 ntBASIC15.81■□□□□ 0.12
UBR4Q5T4S7 ABHD17AP5-201ENST00000580133 923 ntBASIC15.8■□□□□ 0.12
UBR4Q5T4S7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC15.78■□□□□ 0.12
UBR4Q5T4S7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
UBR4Q5T4S7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC15.77■□□□□ 0.11
UBR4Q5T4S7 AC018358.1-201ENST00000631079 1402 ntBASIC15.75■□□□□ 0.11
UBR4Q5T4S7 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
UBR4Q5T4S7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC15.74■□□□□ 0.11
UBR4Q5T4S7 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
UBR4Q5T4S7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
UBR4Q5T4S7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
UBR4Q5T4S7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
UBR4Q5T4S7 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
UBR4Q5T4S7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
UBR4Q5T4S7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC15.71■□□□□ 0.11
UBR4Q5T4S7 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
UBR4Q5T4S7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
UBR4Q5T4S7 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC15.69■□□□□ 0.1
UBR4Q5T4S7 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC15.69■□□□□ 0.1
UBR4Q5T4S7 DUX4L29-201ENST00000425409 679 ntBASIC15.69■□□□□ 0.1
UBR4Q5T4S7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
UBR4Q5T4S7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
UBR4Q5T4S7 AC021231.2-201ENST00000594613 730 ntBASIC15.68■□□□□ 0.1
UBR4Q5T4S7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
UBR4Q5T4S7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC15.67■□□□□ 0.1
UBR4Q5T4S7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
UBR4Q5T4S7 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC15.66■□□□□ 0.1
UBR4Q5T4S7 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
UBR4Q5T4S7 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
UBR4Q5T4S7 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
UBR4Q5T4S7 AC145285.7-201ENST00000614819 1539 ntBASIC15.64■□□□□ 0.09
UBR4Q5T4S7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
UBR4Q5T4S7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
UBR4Q5T4S7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
UBR4Q5T4S7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC15.62■□□□□ 0.09
UBR4Q5T4S7 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
UBR4Q5T4S7 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
UBR4Q5T4S7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
UBR4Q5T4S7 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
UBR4Q5T4S7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
UBR4Q5T4S7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC15.59■□□□□ 0.09
UBR4Q5T4S7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
UBR4Q5T4S7 RNF126P1-201ENST00000567452 1320 ntBASIC15.57■□□□□ 0.08
UBR4Q5T4S7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC15.57■□□□□ 0.08
UBR4Q5T4S7 AL033527.3-201ENST00000566366 1196 ntBASIC15.57■□□□□ 0.08
UBR4Q5T4S7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
UBR4Q5T4S7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
UBR4Q5T4S7 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
UBR4Q5T4S7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
UBR4Q5T4S7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
UBR4Q5T4S7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
UBR4Q5T4S7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
UBR4Q5T4S7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
UBR4Q5T4S7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
UBR4Q5T4S7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
UBR4Q5T4S7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
UBR4Q5T4S7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
UBR4Q5T4S7 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
UBR4Q5T4S7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC15.52■□□□□ 0.08
UBR4Q5T4S7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
UBR4Q5T4S7 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
UBR4Q5T4S7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC15.51■□□□□ 0.07
UBR4Q5T4S7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC15.51■□□□□ 0.07
UBR4Q5T4S7 AC012354.3-201ENST00000623734 483 ntBASIC15.51■□□□□ 0.07
UBR4Q5T4S7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
UBR4Q5T4S7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
UBR4Q5T4S7 AL035685.1-201ENST00000636663 812 ntBASIC15.5■□□□□ 0.07
UBR4Q5T4S7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
UBR4Q5T4S7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
UBR4Q5T4S7 MVK-208ENST00000539696 608 ntTSL 5 BASIC15.49■□□□□ 0.07
UBR4Q5T4S7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC15.49■□□□□ 0.07
UBR4Q5T4S7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
UBR4Q5T4S7 AC008813.1-201ENST00000536597 885 ntBASIC15.48■□□□□ 0.07
UBR4Q5T4S7 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
UBR4Q5T4S7 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC15.48■□□□□ 0.07
UBR4Q5T4S7 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
UBR4Q5T4S7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC15.47■□□□□ 0.07
UBR4Q5T4S7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UBR4Q5T4S7 NTF6A-201ENST00000591175 560 ntBASIC15.47■□□□□ 0.07
UBR4Q5T4S7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC15.46■□□□□ 0.06
UBR4Q5T4S7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
UBR4Q5T4S7 RARRES2P1-201ENST00000474487 481 ntBASIC15.45■□□□□ 0.06
UBR4Q5T4S7 DUX4L11-201ENST00000611504 1267 ntBASIC15.45■□□□□ 0.06
UBR4Q5T4S7 DUX4L12-201ENST00000614593 1267 ntBASIC15.45■□□□□ 0.06
UBR4Q5T4S7 DUX4L14-201ENST00000621227 1267 ntBASIC15.45■□□□□ 0.06
UBR4Q5T4S7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC15.44■□□□□ 0.06
UBR4Q5T4S7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC15.44■□□□□ 0.06
UBR4Q5T4S7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
UBR4Q5T4S7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBR4Q5T4S7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms