Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
LSM1O15116 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LSM1O15116 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.04■□□□□ 0.96
LSM1O15116 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.04■□□□□ 0.96
LSM1O15116 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
LSM1O15116 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LSM1O15116 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.03■□□□□ 0.96
LSM1O15116 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.03■□□□□ 0.96
LSM1O15116 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LSM1O15116 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.03■□□□□ 0.96
LSM1O15116 CA15P2-201ENST00000611168 834 ntBASIC21.03■□□□□ 0.96
LSM1O15116 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
LSM1O15116 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LSM1O15116 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LSM1O15116 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LSM1O15116 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LSM1O15116 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
LSM1O15116 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.02■□□□□ 0.96
LSM1O15116 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LSM1O15116 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
LSM1O15116 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.02■□□□□ 0.96
LSM1O15116 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LSM1O15116 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LSM1O15116 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LSM1O15116 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LSM1O15116 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LSM1O15116 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.02■□□□□ 0.95
LSM1O15116 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LSM1O15116 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
LSM1O15116 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.01■□□□□ 0.95
LSM1O15116 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.01■□□□□ 0.95
LSM1O15116 AL499627.2-201ENST00000606283 725 ntBASIC21.01■□□□□ 0.95
LSM1O15116 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.01■□□□□ 0.95
LSM1O15116 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.01■□□□□ 0.95
LSM1O15116 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LSM1O15116 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LSM1O15116 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21■□□□□ 0.95
LSM1O15116 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21■□□□□ 0.95
LSM1O15116 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 UNC93B8-201ENST00000511903 705 ntBASIC21■□□□□ 0.95
LSM1O15116 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21■□□□□ 0.95
LSM1O15116 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21■□□□□ 0.95
LSM1O15116 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21■□□□□ 0.95
LSM1O15116 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
LSM1O15116 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LSM1O15116 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.99■□□□□ 0.95
LSM1O15116 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.99■□□□□ 0.95
LSM1O15116 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LSM1O15116 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LSM1O15116 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LSM1O15116 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.99■□□□□ 0.95
LSM1O15116 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.99■□□□□ 0.95
LSM1O15116 MIR6724-1-201ENST00000616420 92 ntBASIC20.99■□□□□ 0.95
LSM1O15116 MIR6724-2-201ENST00000616483 92 ntBASIC20.99■□□□□ 0.95
LSM1O15116 MIR6724-4-201ENST00000617390 92 ntBASIC20.99■□□□□ 0.95
LSM1O15116 MIR6724-3-201ENST00000622482 92 ntBASIC20.99■□□□□ 0.95
LSM1O15116 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LSM1O15116 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.99■□□□□ 0.95
LSM1O15116 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LSM1O15116 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LSM1O15116 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LSM1O15116 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.98■□□□□ 0.95
LSM1O15116 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LSM1O15116 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.98■□□□□ 0.95
LSM1O15116 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.98■□□□□ 0.95
LSM1O15116 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LSM1O15116 AC010542.4-201ENST00000563151 1910 ntBASIC20.98■□□□□ 0.95
LSM1O15116 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LSM1O15116 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.97■□□□□ 0.95
LSM1O15116 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
LSM1O15116 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
LSM1O15116 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.97■□□□□ 0.95
LSM1O15116 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.97■□□□□ 0.95
LSM1O15116 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LSM1O15116 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
LSM1O15116 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms