RNA–Protein interactions for RNA: ENST00000467438.1

LINC01140-202, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 2 BASIC

Gene LINC01140, Length 2,375 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-202ENST00000467438 NISCHQ9Y2I1 1504 aa43.74■■■■■ 4.59
LINC01140-202ENST00000467438 SHROOM4Q9ULL8 1493 aa37.83■■■■□ 3.65
LINC01140-202ENST00000467438 SUPT5HO00267 1087 aaKnown RBP37.14■■■■□ 3.54
LINC01140-202ENST00000467438 ZCCHC6Q5VYS8 1495 aaKnown RBP37.02■■■■□ 3.52
LINC01140-202ENST00000467438 CCDC180Q9P1Z9 1646 aa36.89■■■■□ 3.5
LINC01140-202ENST00000467438 DCAF8L2P0C7V8 631 aa36.59■■■■□ 3.45
LINC01140-202ENST00000467438 MYO15BQ96JP2 1530 aa36.1■■■■□ 3.37
LINC01140-202ENST00000467438 CHIC1Q5VXU3 224 aa36.08■■■■□ 3.37
LINC01140-202ENST00000467438 DCAF1Q9Y4B6 1507 aa35.68■■■■□ 3.3
LINC01140-202ENST00000467438 PCGF6Q9BYE7 350 aa35.28■■■■□ 3.24
LINC01140-202ENST00000467438 HRCP23327 699 aa35.26■■■■□ 3.24
LINC01140-202ENST00000467438 LOC105371045A0A1W2PR82 267 aa35.2■■■■□ 3.23
LINC01140-202ENST00000467438 ABCC9O60706 1549 aa34.96■■■■□ 3.19
LINC01140-202ENST00000467438 SCRIBQ14160 1630 aa34.94■■■■□ 3.18
LINC01140-202ENST00000467438 PPARGC1BQ86YN6 1023 aaKnown RBP34.79■■■■□ 3.16
LINC01140-202ENST00000467438 RSF1Q96T23 1441 aaPredicted RBP34.78■■■■□ 3.16
LINC01140-202ENST00000467438 RB1CC1Q8TDY2 1594 aa34.49■■■■□ 3.11
LINC01140-202ENST00000467438 TRIM41Q8WV44 630 aa34.43■■■■□ 3.1
LINC01140-202ENST00000467438 FAM9AQ8IZU1 332 aaPredicted RBP34.38■■■■□ 3.09
LINC01140-202ENST00000467438 TRIM26Q12899 539 aaPredicted RBP34.36■■■■□ 3.09
LINC01140-202ENST00000467438 CECR2Q9BXF3 1484 aa34.3■■■■□ 3.08
LINC01140-202ENST00000467438 EHMT2Q96KQ7 1210 aa34.26■■■■□ 3.07
LINC01140-202ENST00000467438 MROH2BQ7Z745 1585 aa34.14■■■■□ 3.06
LINC01140-202ENST00000467438 NACADO15069 1562 aa34.12■■■■□ 3.05
LINC01140-202ENST00000467438 WIZO95785 1651 aa33.98■■■■□ 3.03
LINC01140-202ENST00000467438 BAZ1AQ9NRL2 1556 aaPredicted RBP33.61■■■□□ 2.97
LINC01140-202ENST00000467438 ZEB1P37275 1124 aaPredicted RBP33.52■■■□□ 2.96
LINC01140-202ENST00000467438 EIF4G1Q04637 1599 aaKnown RBP33.48■■■□□ 2.95
LINC01140-202ENST00000467438 ABCC8Q09428 1581 aa33.36■■■□□ 2.93
LINC01140-202ENST00000467438 CCDC88BA6NC98 1476 aa33.28■■■□□ 2.92
LINC01140-202ENST00000467438 TOP2AP11388 1531 aaKnown RBP33.28■■■□□ 2.92
LINC01140-202ENST00000467438 SMARCA4P51532 1647 aa33.27■■■□□ 2.92
LINC01140-202ENST00000467438 UNC13AQ9UPW8 1703 aa33.2■■■□□ 2.9
LINC01140-202ENST00000467438 SMARCA2P51531 1590 aa33.18■■■□□ 2.9
LINC01140-202ENST00000467438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.17■■■□□ 2.9
LINC01140-202ENST00000467438 TTBK1Q5TCY1 1321 aaPredicted RBP33.16■■■□□ 2.9
LINC01140-202ENST00000467438 SOGA1O94964 1423 aa33.09■■■□□ 2.89
LINC01140-202ENST00000467438 PABPN1Q86U42 306 aaKnown RBP eCLIP33.07■■■□□ 2.89
LINC01140-202ENST00000467438 RUSC2Q8N2Y8 1516 aa32.97■■■□□ 2.87
LINC01140-202ENST00000467438 CCER1Q8TC90 406 aaPredicted RBP32.97■■■□□ 2.87
LINC01140-202ENST00000467438 CEP162Q5TB80 1403 aa32.93■■■□□ 2.86
LINC01140-202ENST00000467438 CSRNP3Q8WYN3 585 aa32.82■■■□□ 2.84
LINC01140-202ENST00000467438 WRNQ14191 1432 aaPredicted RBP eCLIP32.81■■■□□ 2.84
LINC01140-202ENST00000467438 UBTFP17480 764 aaKnown RBP32.81■■■□□ 2.84
LINC01140-202ENST00000467438 BICRAQ9NZM4 1560 aa32.79■■■□□ 2.84
LINC01140-202ENST00000467438 TNIKQ9UKE5 1360 aa32.78■■■□□ 2.84
LINC01140-202ENST00000467438 SCAF1Q9H7N4 1312 aaKnown RBP32.73■■■□□ 2.83
LINC01140-202ENST00000467438 EEA1Q15075 1411 aa32.61■■■□□ 2.81
LINC01140-202ENST00000467438 GOLGA3Q08378 1498 aa32.55■■■□□ 2.8
LINC01140-202ENST00000467438 SYNJ1O43426 1573 aa32.52■■■□□ 2.8
LINC01140-202ENST00000467438 PEG3Q9GZU2 1588 aa32.49■■■□□ 2.79
LINC01140-202ENST00000467438 DIEXFQ68CQ4 756 aaKnown RBP32.41■■■□□ 2.78
LINC01140-202ENST00000467438 ATAD2BQ9ULI0 1458 aa32.4■■■□□ 2.78
LINC01140-202ENST00000467438 RANGAP1P46060 587 aaPredicted RBP32.35■■■□□ 2.77
LINC01140-202ENST00000467438 BAZ1BQ9UIG0 1483 aaKnown RBP32.32■■■□□ 2.76
LINC01140-202ENST00000467438 CEP164Q9UPV0 1460 aa32.32■■■□□ 2.76
LINC01140-202ENST00000467438 NEUROD1Q13562 356 aa32.31■■■□□ 2.76
LINC01140-202ENST00000467438 HNRNPUL2Q1KMD3 747 aaKnown RBP32.29■■■□□ 2.76
LINC01140-202ENST00000467438 CLIP1P30622 1438 aa32.26■■■□□ 2.75
LINC01140-202ENST00000467438 ACIN1Q9UKV3 1341 aaKnown RBP32.24■■■□□ 2.75
LINC01140-202ENST00000467438 KIF21BO75037 1637 aa32.24■■■□□ 2.75
LINC01140-202ENST00000467438 RAPGEF2Q9Y4G8 1499 aa32.22■■■□□ 2.75
LINC01140-202ENST00000467438 VPS8Q8N3P4 1428 aa32.1■■■□□ 2.73
LINC01140-202ENST00000467438 ZNF316A6NFI3 1004 aaPredicted RBP32.07■■■□□ 2.72
LINC01140-202ENST00000467438 APLP2Q06481 763 aa31.99■■■□□ 2.71
LINC01140-202ENST00000467438 TOP2BQ02880 1626 aa31.98■■■□□ 2.71
LINC01140-202ENST00000467438 GTF3C3Q9Y5Q9 886 aa31.97■■■□□ 2.71
LINC01140-202ENST00000467438 CENPBP07199 599 aaPredicted RBP31.9■■■□□ 2.7
LINC01140-202ENST00000467438 YTHDC1Q96MU7 727 aaKnown RBP31.84■■■□□ 2.69
LINC01140-202ENST00000467438 PELP1Q8IZL8 1130 aaKnown RBP31.83■■■□□ 2.69
LINC01140-202ENST00000467438 BIVM-ERCC5R4GMW8 1640 aa31.81■■■□□ 2.68
LINC01140-202ENST00000467438 MIER1Q8N108 512 aa31.78■■■□□ 2.68
LINC01140-202ENST00000467438 KANK4Q5T7N3 995 aaPredicted RBP31.76■■■□□ 2.67
LINC01140-202ENST00000467438 PRXQ9BXM0 1461 aa31.76■■■□□ 2.67
LINC01140-202ENST00000467438 ARAP1Q96P48 1450 aa31.74■■■□□ 2.67
LINC01140-202ENST00000467438 CUX1P39880 1505 aa31.73■■■□□ 2.67
LINC01140-202ENST00000467438 ERICH3Q5RHP9 1530 aa31.66■■■□□ 2.66
LINC01140-202ENST00000467438 NCAPD3P42695 1498 aa31.65■■■□□ 2.66
LINC01140-202ENST00000467438 HMGXB3Q12766 1538 aa31.59■■■□□ 2.65
LINC01140-202ENST00000467438 KIF27Q86VH2 1401 aa31.55■■■□□ 2.64
LINC01140-202ENST00000467438 DHX57Q6P158 1386 aaKnown RBP31.54■■■□□ 2.64
LINC01140-202ENST00000467438 CFTRP13569 1480 aa31.5■■■□□ 2.63
LINC01140-202ENST00000467438 ARHGAP35Q9NRY4 1499 aa31.43■■■□□ 2.62
LINC01140-202ENST00000467438 ITGAEP38570 1179 aa31.42■■■□□ 2.62
LINC01140-202ENST00000467438 RRBP1Q9P2E9 1410 aaKnown RBP31.36■■■□□ 2.61
LINC01140-202ENST00000467438 CUX2O14529 1486 aa31.31■■■□□ 2.6
LINC01140-202ENST00000467438 CLSPNQ9HAW4 1339 aa31.29■■■□□ 2.6
LINC01140-202ENST00000467438 IGF1RP08069 1367 aa31.29■■■□□ 2.6
LINC01140-202ENST00000467438 CCNB3Q8WWL7 1395 aa31.28■■■□□ 2.6
LINC01140-202ENST00000467438 CARMIL1Q5VZK9 1371 aa31.14■■■□□ 2.58
LINC01140-202ENST00000467438 CADPSQ9ULU8 1353 aa31.14■■■□□ 2.58
LINC01140-202ENST00000467438 FGD5Q6ZNL6 1462 aa31.13■■■□□ 2.57
LINC01140-202ENST00000467438 P3H3Q8IVL6 736 aa31.13■■■□□ 2.57
LINC01140-202ENST00000467438 PRDM2Q13029 1718 aa31.09■■■□□ 2.57
LINC01140-202ENST00000467438 RAB3GAP2Q9H2M9 1393 aa31.09■■■□□ 2.57
LINC01140-202ENST00000467438 TIAM1Q13009 1591 aa31.05■■■□□ 2.56
LINC01140-202ENST00000467438 ATP1B4Q9UN42 357 aaPredicted RBP31.02■■■□□ 2.56
LINC01140-202ENST00000467438 PHLDB1Q86UU1 1377 aa31.01■■■□□ 2.55
LINC01140-202ENST00000467438 MAPKBP1O60336 1514 aa30.97■■■□□ 2.55
LINC01140-202ENST00000467438 LRRC9Q6ZRR7 1453 aa30.97■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms