Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBE3DQ7Z6J8 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 SLC47A1P1-202ENST00000449666 945 ntBASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 CA15P2-201ENST00000611168 834 ntBASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UBE3DQ7Z6J8 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
UBE3DQ7Z6J8 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
UBE3DQ7Z6J8 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
UBE3DQ7Z6J8 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UBE3DQ7Z6J8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
UBE3DQ7Z6J8 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 AC135279.3-201ENST00000610945 1311 ntBASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 AC137767.1-201ENST00000602918 1920 ntBASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBE3DQ7Z6J8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 PBX2P1-201ENST00000493219 1291 ntBASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3DQ7Z6J8 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 AC106739.1-201ENST00000617035 715 ntBASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.8■□□□□ 0.92
UBE3DQ7Z6J8 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
UBE3DQ7Z6J8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 AC139530.1-201ENST00000575312 1977 ntBASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 EP400NL-214ENST00000641289 2402 ntBASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 ECEL1P1-201ENST00000373592 1742 ntBASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3DQ7Z6J8 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 AC242852.2-201ENST00000615738 1807 ntBASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3DQ7Z6J8 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 201.6 ms