RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 NISCHQ9Y2I1 1504 aa51.4■■■■■ 5.82
PDLIM3-203ENST00000284771 CCDC180Q9P1Z9 1646 aa45.19■■■■■ 4.82
PDLIM3-203ENST00000284771 ABCC9O60706 1549 aa43.52■■■■■ 4.56
PDLIM3-203ENST00000284771 ZCCHC6Q5VYS8 1495 aaKnown RBP42.99■■■■■ 4.47
PDLIM3-203ENST00000284771 DCAF8L2P0C7V8 631 aa42.68■■■■■ 4.42
PDLIM3-203ENST00000284771 DCAF1Q9Y4B6 1507 aa42.49■■■■■ 4.39
PDLIM3-203ENST00000284771 MYO15BQ96JP2 1530 aa42.33■■■■■ 4.37
PDLIM3-203ENST00000284771 NACADO15069 1562 aa42.31■■■■■ 4.36
PDLIM3-203ENST00000284771 RB1CC1Q8TDY2 1594 aa42.13■■■■■ 4.33
PDLIM3-203ENST00000284771 SCRIBQ14160 1630 aa41.42■■■■■ 4.22
PDLIM3-203ENST00000284771 UNC13AQ9UPW8 1703 aa41.3■■■■■ 4.2
PDLIM3-203ENST00000284771 SHROOM4Q9ULL8 1493 aa41.27■■■■■ 4.2
PDLIM3-203ENST00000284771 BICRAQ9NZM4 1560 aa40.95■■■■■ 4.15
PDLIM3-203ENST00000284771 PABPN1Q86U42 306 aaKnown RBP eCLIP40.9■■■■■ 4.14
PDLIM3-203ENST00000284771 CECR2Q9BXF3 1484 aa40.04■■■■■ 4
PDLIM3-203ENST00000284771 EIF4G1Q04637 1599 aaKnown RBP39.75■■■■□ 3.95
PDLIM3-203ENST00000284771 BAZ1AQ9NRL2 1556 aaPredicted RBP39.72■■■■□ 3.95
PDLIM3-203ENST00000284771 MROH2BQ7Z745 1585 aa39.69■■■■□ 3.94
PDLIM3-203ENST00000284771 SMARCA4P51532 1647 aa39.68■■■■□ 3.94
PDLIM3-203ENST00000284771 RSF1Q96T23 1441 aaPredicted RBP39.55■■■■□ 3.92
PDLIM3-203ENST00000284771 CC2D2AQ9P2K1 1620 aa39.38■■■■□ 3.89
PDLIM3-203ENST00000284771 WIZO95785 1651 aa39.3■■■■□ 3.88
PDLIM3-203ENST00000284771 DNAJC5BQ9UF47 199 aa39.29■■■■□ 3.88
PDLIM3-203ENST00000284771 SUPT5HO00267 1087 aaKnown RBP39.27■■■■□ 3.88
PDLIM3-203ENST00000284771 ATAD2BQ9ULI0 1458 aa39.27■■■■□ 3.88
PDLIM3-203ENST00000284771 PEG3Q9GZU2 1588 aa39.26■■■■□ 3.88
PDLIM3-203ENST00000284771 SMARCA2P51531 1590 aa39.17■■■■□ 3.86
PDLIM3-203ENST00000284771 NCAPD3P42695 1498 aa39.09■■■■□ 3.85
PDLIM3-203ENST00000284771 BAZ1BQ9UIG0 1483 aaKnown RBP38.95■■■■□ 3.83
PDLIM3-203ENST00000284771 HMGXB3Q12766 1538 aa38.92■■■■□ 3.82
PDLIM3-203ENST00000284771 TOP2AP11388 1531 aaKnown RBP38.85■■■■□ 3.81
PDLIM3-203ENST00000284771 CCDC88BA6NC98 1476 aa38.47■■■■□ 3.75
PDLIM3-203ENST00000284771 CADPSQ9ULU8 1353 aa38.01■■■■□ 3.68
PDLIM3-203ENST00000284771 NESP48681 1621 aa37.97■■■■□ 3.67
PDLIM3-203ENST00000284771 CFTRP13569 1480 aa37.97■■■■□ 3.67
PDLIM3-203ENST00000284771 LAMC3Q9Y6N6 1575 aa37.86■■■■□ 3.65
PDLIM3-203ENST00000284771 PRDM2Q13029 1718 aa37.67■■■■□ 3.62
PDLIM3-203ENST00000284771 PDS5BQ9NTI5 1447 aa37.58■■■■□ 3.61
PDLIM3-203ENST00000284771 FANCD2Q9BXW9 1451 aa37.56■■■■□ 3.6
PDLIM3-203ENST00000284771 KIF21AQ7Z4S6 1674 aa37.48■■■■□ 3.59
PDLIM3-203ENST00000284771 CEP164Q9UPV0 1460 aa37.39■■■■□ 3.58
PDLIM3-203ENST00000284771 ABCC8Q09428 1581 aa37.37■■■■□ 3.57
PDLIM3-203ENST00000284771 ERCC6Q03468 1493 aa37.35■■■■□ 3.57
PDLIM3-203ENST00000284771 WRNQ14191 1432 aaPredicted RBP eCLIP37.21■■■■□ 3.55
PDLIM3-203ENST00000284771 CHIC1Q5VXU3 224 aa37.18■■■■□ 3.54
PDLIM3-203ENST00000284771 URB2Q14146 1524 aaKnown RBP37.17■■■■□ 3.54
PDLIM3-203ENST00000284771 CUX1P39880 1505 aa37.15■■■■□ 3.54
PDLIM3-203ENST00000284771 MRC2Q9UBG0 1479 aa37.15■■■■□ 3.54
PDLIM3-203ENST00000284771 SYNJ1O43426 1573 aa37.11■■■■□ 3.53
PDLIM3-203ENST00000284771 THOC2Q8NI27 1593 aaKnown RBP37.11■■■■□ 3.53
PDLIM3-203ENST00000284771 TOPBP1Q92547 1522 aa37.08■■■■□ 3.53
PDLIM3-203ENST00000284771 DNMBPQ6XZF7 1577 aa37.06■■■■□ 3.52
PDLIM3-203ENST00000284771 TOP2BQ02880 1626 aa37.02■■■■□ 3.52
PDLIM3-203ENST00000284771 WDR62O43379 1518 aa37.01■■■■□ 3.52
PDLIM3-203ENST00000284771 BIVM-ERCC5R4GMW8 1640 aa36.99■■■■□ 3.51
PDLIM3-203ENST00000284771 TRIM41Q8WV44 630 aa36.99■■■■□ 3.51
PDLIM3-203ENST00000284771 FGD5Q6ZNL6 1462 aa36.87■■■■□ 3.49
PDLIM3-203ENST00000284771 POLA1P09884 1462 aaPredicted RBP36.83■■■■□ 3.49
PDLIM3-203ENST00000284771 CUX2O14529 1486 aa36.75■■■■□ 3.47
PDLIM3-203ENST00000284771 RAD54L2Q9Y4B4 1467 aa36.72■■■■□ 3.47
PDLIM3-203ENST00000284771 SOGA1O94964 1423 aa36.69■■■■□ 3.46
PDLIM3-203ENST00000284771 TARBP1Q13395 1621 aaKnown RBP36.61■■■■□ 3.45
PDLIM3-203ENST00000284771 IFT140Q96RY7 1462 aa36.56■■■■□ 3.44
PDLIM3-203ENST00000284771 ABCA10Q8WWZ4 1543 aa36.52■■■■□ 3.44
PDLIM3-203ENST00000284771 WDR97A6NE52 1622 aa36.49■■■■□ 3.43
PDLIM3-203ENST00000284771 RUSC2Q8N2Y8 1516 aa36.45■■■■□ 3.43
PDLIM3-203ENST00000284771 ZNF608Q9ULD9 1512 aaPredicted RBP36.45■■■■□ 3.43
PDLIM3-203ENST00000284771 TDRD9Q8NDG6 1382 aaKnown RBP36.44■■■■□ 3.42
PDLIM3-203ENST00000284771 AQRO60306 1485 aaKnown RBP eCLIP36.35■■■■□ 3.41
PDLIM3-203ENST00000284771 KIF27Q86VH2 1401 aa36.34■■■■□ 3.41
PDLIM3-203ENST00000284771 ABCA5Q8WWZ7 1642 aa36.3■■■■□ 3.4
PDLIM3-203ENST00000284771 FAM9AQ8IZU1 332 aaPredicted RBP36.29■■■■□ 3.4
PDLIM3-203ENST00000284771 GAPVD1Q14C86 1478 aa36.27■■■■□ 3.4
PDLIM3-203ENST00000284771 EIF4G3O43432 1585 aaKnown RBP36.26■■■■□ 3.39
PDLIM3-203ENST00000284771 IGF1RP08069 1367 aa36.17■■■■□ 3.38
PDLIM3-203ENST00000284771 EEA1Q15075 1411 aa36.16■■■■□ 3.38
PDLIM3-203ENST00000284771 CSRNP3Q8WYN3 585 aa36.12■■■■□ 3.37
PDLIM3-203ENST00000284771 GRIN2BQ13224 1484 aa36.1■■■■□ 3.37
PDLIM3-203ENST00000284771 PBRM1Q86U86 1689 aa36.1■■■■□ 3.37
PDLIM3-203ENST00000284771 ERICH3Q5RHP9 1530 aa36.07■■■■□ 3.37
PDLIM3-203ENST00000284771 SNAPC4Q5SXM2 1469 aa35.97■■■■□ 3.35
PDLIM3-203ENST00000284771 CARMIL1Q5VZK9 1371 aa35.93■■■■□ 3.34
PDLIM3-203ENST00000284771 PRXQ9BXM0 1461 aa35.92■■■■□ 3.34
PDLIM3-203ENST00000284771 MAGI1Q96QZ7 1491 aaPredicted RBP35.89■■■■□ 3.34
PDLIM3-203ENST00000284771 CUL7Q14999 1698 aa35.88■■■■□ 3.33
PDLIM3-203ENST00000284771 ADAMTS12P58397 1594 aa35.87■■■■□ 3.33
PDLIM3-203ENST00000284771 FHAD1B1AJZ9 1412 aa35.85■■■■□ 3.33
PDLIM3-203ENST00000284771 EHMT2Q96KQ7 1210 aa35.79■■■■□ 3.32
PDLIM3-203ENST00000284771 RAPGEF2Q9Y4G8 1499 aa35.78■■■■□ 3.32
PDLIM3-203ENST00000284771 KIF21BO75037 1637 aa35.77■■■■□ 3.32
PDLIM3-203ENST00000284771 SYNJ2O15056 1496 aa35.77■■■■□ 3.32
PDLIM3-203ENST00000284771 LOC105371045A0A1W2PR82 267 aa35.74■■■■□ 3.31
PDLIM3-203ENST00000284771 FBLN2P98095 1184 aa35.72■■■■□ 3.31
PDLIM3-203ENST00000284771 CHMP7Q8WUX9 453 aaPredicted RBP35.72■■■■□ 3.31
PDLIM3-203ENST00000284771 GRIN2AQ12879 1464 aa35.68■■■■□ 3.3
PDLIM3-203ENST00000284771 GOLGA3Q08378 1498 aa35.64■■■■□ 3.3
PDLIM3-203ENST00000284771 CHD1O14646 1710 aa35.64■■■■□ 3.3
PDLIM3-203ENST00000284771 UBTFP17480 764 aaKnown RBP35.53■■■■□ 3.28
PDLIM3-203ENST00000284771 CEP170Q5SW79 1584 aa35.49■■■■□ 3.27
PDLIM3-203ENST00000284771 NUP160Q12769 1436 aa35.48■■■■□ 3.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms