RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 NISCHQ9Y2I1 1504 aa46.92■■■■■ 5.1
TPM4-201ENST00000300933 CCDC180Q9P1Z9 1646 aa40.03■■■■■ 4
TPM4-201ENST00000300933 SHROOM4Q9ULL8 1493 aa39.85■■■■□ 3.97
TPM4-201ENST00000300933 DCAF8L2P0C7V8 631 aa39.52■■■■□ 3.92
TPM4-201ENST00000300933 ZCCHC6Q5VYS8 1495 aaKnown RBP39.5■■■■□ 3.91
TPM4-201ENST00000300933 SUPT5HO00267 1087 aaKnown RBP38.76■■■■□ 3.8
TPM4-201ENST00000300933 DCAF1Q9Y4B6 1507 aa38.32■■■■□ 3.73
TPM4-201ENST00000300933 ABCC9O60706 1549 aa38.02■■■■□ 3.68
TPM4-201ENST00000300933 SCRIBQ14160 1630 aa37.67■■■■□ 3.62
TPM4-201ENST00000300933 MYO15BQ96JP2 1530 aa37.44■■■■□ 3.58
TPM4-201ENST00000300933 NACADO15069 1562 aa37.25■■■■□ 3.55
TPM4-201ENST00000300933 CHIC1Q5VXU3 224 aa37.21■■■■□ 3.55
TPM4-201ENST00000300933 RSF1Q96T23 1441 aaPredicted RBP36.94■■■■□ 3.5
TPM4-201ENST00000300933 RB1CC1Q8TDY2 1594 aa36.82■■■■□ 3.49
TPM4-201ENST00000300933 CECR2Q9BXF3 1484 aa36.78■■■■□ 3.48
TPM4-201ENST00000300933 MROH2BQ7Z745 1585 aa36.52■■■■□ 3.44
TPM4-201ENST00000300933 PABPN1Q86U42 306 aaKnown RBP eCLIP36.35■■■■□ 3.41
TPM4-201ENST00000300933 WIZO95785 1651 aa36.29■■■■□ 3.4
TPM4-201ENST00000300933 UNC13AQ9UPW8 1703 aa36.28■■■■□ 3.4
TPM4-201ENST00000300933 LOC105371045A0A1W2PR82 267 aa36.24■■■■□ 3.39
TPM4-201ENST00000300933 TRIM41Q8WV44 630 aa36.05■■■■□ 3.36
TPM4-201ENST00000300933 BAZ1AQ9NRL2 1556 aaPredicted RBP36.05■■■■□ 3.36
TPM4-201ENST00000300933 FAM9AQ8IZU1 332 aaPredicted RBP35.9■■■■□ 3.34
TPM4-201ENST00000300933 BICRAQ9NZM4 1560 aa35.9■■■■□ 3.34
TPM4-201ENST00000300933 SMARCA4P51532 1647 aa35.85■■■■□ 3.33
TPM4-201ENST00000300933 EHMT2Q96KQ7 1210 aa35.76■■■■□ 3.31
TPM4-201ENST00000300933 TOP2AP11388 1531 aaKnown RBP35.59■■■■□ 3.29
TPM4-201ENST00000300933 HRCP23327 699 aa35.59■■■■□ 3.29
TPM4-201ENST00000300933 CCDC88BA6NC98 1476 aa35.55■■■■□ 3.28
TPM4-201ENST00000300933 PCGF6Q9BYE7 350 aa35.48■■■■□ 3.27
TPM4-201ENST00000300933 SMARCA2P51531 1590 aa35.42■■■■□ 3.26
TPM4-201ENST00000300933 EIF4G1Q04637 1599 aaKnown RBP35.32■■■■□ 3.25
TPM4-201ENST00000300933 ABCC8Q09428 1581 aa35.3■■■■□ 3.24
TPM4-201ENST00000300933 ATAD2BQ9ULI0 1458 aa35.15■■■■□ 3.22
TPM4-201ENST00000300933 PEG3Q9GZU2 1588 aa35.09■■■■□ 3.21
TPM4-201ENST00000300933 PPARGC1BQ86YN6 1023 aaKnown RBP35.03■■■■□ 3.2
TPM4-201ENST00000300933 BAZ1BQ9UIG0 1483 aaKnown RBP35.03■■■■□ 3.2
TPM4-201ENST00000300933 SOGA1O94964 1423 aa34.85■■■■□ 3.17
TPM4-201ENST00000300933 TRIM26Q12899 539 aaPredicted RBP34.78■■■■□ 3.16
TPM4-201ENST00000300933 RUSC2Q8N2Y8 1516 aa34.75■■■■□ 3.15
TPM4-201ENST00000300933 WRNQ14191 1432 aaPredicted RBP eCLIP34.71■■■■□ 3.15
TPM4-201ENST00000300933 CSRNP3Q8WYN3 585 aa34.58■■■■□ 3.13
TPM4-201ENST00000300933 SYNJ1O43426 1573 aa34.56■■■■□ 3.12
TPM4-201ENST00000300933 NCAPD3P42695 1498 aa34.53■■■■□ 3.12
TPM4-201ENST00000300933 UBTFP17480 764 aaKnown RBP34.49■■■■□ 3.11
TPM4-201ENST00000300933 HMGXB3Q12766 1538 aa34.39■■■■□ 3.1
TPM4-201ENST00000300933 TTBK1Q5TCY1 1321 aaPredicted RBP34.37■■■■□ 3.09
TPM4-201ENST00000300933 EEA1Q15075 1411 aa34.3■■■■□ 3.08
TPM4-201ENST00000300933 CEP162Q5TB80 1403 aa34.29■■■■□ 3.08
TPM4-201ENST00000300933 TNIKQ9UKE5 1360 aa34.23■■■■□ 3.07
TPM4-201ENST00000300933 RANGAP1P46060 587 aaPredicted RBP34.19■■■■□ 3.06
TPM4-201ENST00000300933 GOLGA3Q08378 1498 aa34.14■■■■□ 3.06
TPM4-201ENST00000300933 TOP2BQ02880 1626 aa34.1■■■■□ 3.05
TPM4-201ENST00000300933 CC2D2AQ9P2K1 1620 aa34.1■■■■□ 3.05
TPM4-201ENST00000300933 CFTRP13569 1480 aa34.09■■■■□ 3.05
TPM4-201ENST00000300933 CUX1P39880 1505 aa34.02■■■■□ 3.04
TPM4-201ENST00000300933 CEP164Q9UPV0 1460 aa34.01■■■■□ 3.04
TPM4-201ENST00000300933 RAPGEF2Q9Y4G8 1499 aa33.99■■■■□ 3.03
TPM4-201ENST00000300933 BIVM-ERCC5R4GMW8 1640 aa33.94■■■■□ 3.02
TPM4-201ENST00000300933 CADPSQ9ULU8 1353 aa33.9■■■■□ 3.02
TPM4-201ENST00000300933 KIF21BO75037 1637 aa33.88■■■■□ 3.01
TPM4-201ENST00000300933 CLIP1P30622 1438 aa33.81■■■■□ 3
TPM4-201ENST00000300933 DNAJC5BQ9UF47 199 aa33.77■■■■□ 3
TPM4-201ENST00000300933 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.74■■■□□ 2.99
TPM4-201ENST00000300933 KIF27Q86VH2 1401 aa33.68■■■□□ 2.98
TPM4-201ENST00000300933 NESP48681 1621 aa33.68■■■□□ 2.98
TPM4-201ENST00000300933 PRXQ9BXM0 1461 aa33.63■■■□□ 2.97
TPM4-201ENST00000300933 PRDM2Q13029 1718 aa33.6■■■□□ 2.97
TPM4-201ENST00000300933 FANCD2Q9BXW9 1451 aa33.58■■■□□ 2.97
TPM4-201ENST00000300933 CUX2O14529 1486 aa33.57■■■□□ 2.97
TPM4-201ENST00000300933 ZEB1P37275 1124 aaPredicted RBP33.57■■■□□ 2.97
TPM4-201ENST00000300933 PELP1Q8IZL8 1130 aaKnown RBP33.57■■■□□ 2.97
TPM4-201ENST00000300933 FGD5Q6ZNL6 1462 aa33.54■■■□□ 2.96
TPM4-201ENST00000300933 CCER1Q8TC90 406 aaPredicted RBP33.52■■■□□ 2.96
TPM4-201ENST00000300933 VPS8Q8N3P4 1428 aa33.51■■■□□ 2.95
TPM4-201ENST00000300933 SCAF1Q9H7N4 1312 aaKnown RBP33.5■■■□□ 2.95
TPM4-201ENST00000300933 APLP2Q06481 763 aa33.48■■■□□ 2.95
TPM4-201ENST00000300933 ERICH3Q5RHP9 1530 aa33.45■■■□□ 2.95
TPM4-201ENST00000300933 IGF1RP08069 1367 aa33.44■■■□□ 2.94
TPM4-201ENST00000300933 RAD54L2Q9Y4B4 1467 aa33.38■■■□□ 2.93
TPM4-201ENST00000300933 HNRNPUL2Q1KMD3 747 aaKnown RBP33.36■■■□□ 2.93
TPM4-201ENST00000300933 ARAP1Q96P48 1450 aa33.31■■■□□ 2.92
TPM4-201ENST00000300933 CARMIL1Q5VZK9 1371 aa33.29■■■□□ 2.92
TPM4-201ENST00000300933 TOPBP1Q92547 1522 aa33.26■■■□□ 2.92
TPM4-201ENST00000300933 KANK4Q5T7N3 995 aaPredicted RBP33.23■■■□□ 2.91
TPM4-201ENST00000300933 POLA1P09884 1462 aaPredicted RBP33.22■■■□□ 2.91
TPM4-201ENST00000300933 DNMBPQ6XZF7 1577 aa33.2■■■□□ 2.91
TPM4-201ENST00000300933 ARHGAP35Q9NRY4 1499 aa33.16■■■□□ 2.9
TPM4-201ENST00000300933 P3H3Q8IVL6 736 aa33.15■■■□□ 2.9
TPM4-201ENST00000300933 URB2Q14146 1524 aaKnown RBP33.14■■■□□ 2.89
TPM4-201ENST00000300933 LAMC3Q9Y6N6 1575 aa33.11■■■□□ 2.89
TPM4-201ENST00000300933 TDRD9Q8NDG6 1382 aaKnown RBP33.07■■■□□ 2.88
TPM4-201ENST00000300933 ABCA10Q8WWZ4 1543 aa33.04■■■□□ 2.88
TPM4-201ENST00000300933 PDS5BQ9NTI5 1447 aa33.03■■■□□ 2.88
TPM4-201ENST00000300933 ATP1B4Q9UN42 357 aaPredicted RBP32.96■■■□□ 2.87
TPM4-201ENST00000300933 KIF21AQ7Z4S6 1674 aa32.94■■■□□ 2.86
TPM4-201ENST00000300933 ITGAEP38570 1179 aa32.83■■■□□ 2.85
TPM4-201ENST00000300933 FHOD3Q2V2M9 1422 aa32.78■■■□□ 2.84
TPM4-201ENST00000300933 GAPVD1Q14C86 1478 aa32.77■■■□□ 2.84
TPM4-201ENST00000300933 ACIN1Q9UKV3 1341 aaKnown RBP32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms