RNA–Protein interactions for RNA: ENST00000533390.5

AP004608.1-202, humanhuman

TSL 1 (best) BASIC

Gene AP004608.1, Length 1,863 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP004608.1-202ENST00000533390 NISCHQ9Y2I1 1504 aa48.79■■■■■ 5.4
AP004608.1-202ENST00000533390 CCDC180Q9P1Z9 1646 aa42.46■■■■■ 4.39
AP004608.1-202ENST00000533390 ZCCHC6Q5VYS8 1495 aaKnown RBP41.03■■■■■ 4.16
AP004608.1-202ENST00000533390 DCAF1Q9Y4B6 1507 aa40.32■■■■■ 4.05
AP004608.1-202ENST00000533390 DCAF8L2P0C7V8 631 aa40.3■■■■■ 4.04
AP004608.1-202ENST00000533390 SHROOM4Q9ULL8 1493 aa40.03■■■■■ 4
AP004608.1-202ENST00000533390 ABCC9O60706 1549 aa39.91■■■■□ 3.98
AP004608.1-202ENST00000533390 MYO15BQ96JP2 1530 aa39.74■■■■□ 3.95
AP004608.1-202ENST00000533390 NACADO15069 1562 aa39.46■■■■□ 3.91
AP004608.1-202ENST00000533390 SCRIBQ14160 1630 aa39.1■■■■□ 3.85
AP004608.1-202ENST00000533390 RB1CC1Q8TDY2 1594 aa39.09■■■■□ 3.85
AP004608.1-202ENST00000533390 SUPT5HO00267 1087 aaKnown RBP38.67■■■■□ 3.78
AP004608.1-202ENST00000533390 UNC13AQ9UPW8 1703 aa38.35■■■■□ 3.73
AP004608.1-202ENST00000533390 RSF1Q96T23 1441 aaPredicted RBP37.94■■■■□ 3.66
AP004608.1-202ENST00000533390 CECR2Q9BXF3 1484 aa37.88■■■■□ 3.65
AP004608.1-202ENST00000533390 BICRAQ9NZM4 1560 aa37.86■■■■□ 3.65
AP004608.1-202ENST00000533390 MROH2BQ7Z745 1585 aa37.7■■■■□ 3.63
AP004608.1-202ENST00000533390 BAZ1AQ9NRL2 1556 aaPredicted RBP37.68■■■■□ 3.62
AP004608.1-202ENST00000533390 PABPN1Q86U42 306 aaKnown RBP eCLIP37.68■■■■□ 3.62
AP004608.1-202ENST00000533390 SMARCA4P51532 1647 aa37.48■■■■□ 3.59
AP004608.1-202ENST00000533390 WIZO95785 1651 aa37.45■■■■□ 3.59
AP004608.1-202ENST00000533390 CHIC1Q5VXU3 224 aa37.11■■■■□ 3.53
AP004608.1-202ENST00000533390 TOP2AP11388 1531 aaKnown RBP37.05■■■■□ 3.52
AP004608.1-202ENST00000533390 PEG3Q9GZU2 1588 aa36.97■■■■□ 3.51
AP004608.1-202ENST00000533390 SMARCA2P51531 1590 aa36.79■■■■□ 3.48
AP004608.1-202ENST00000533390 ATAD2BQ9ULI0 1458 aa36.76■■■■□ 3.48
AP004608.1-202ENST00000533390 EIF4G1Q04637 1599 aaKnown RBP36.72■■■■□ 3.47
AP004608.1-202ENST00000533390 CCDC88BA6NC98 1476 aa36.66■■■■□ 3.46
AP004608.1-202ENST00000533390 BAZ1BQ9UIG0 1483 aaKnown RBP36.61■■■■□ 3.45
AP004608.1-202ENST00000533390 HMGXB3Q12766 1538 aa36.39■■■■□ 3.42
AP004608.1-202ENST00000533390 NCAPD3P42695 1498 aa36.39■■■■□ 3.42
AP004608.1-202ENST00000533390 TRIM41Q8WV44 630 aa36.34■■■■□ 3.41
AP004608.1-202ENST00000533390 CC2D2AQ9P2K1 1620 aa36.13■■■■□ 3.37
AP004608.1-202ENST00000533390 ABCC8Q09428 1581 aa36.01■■■■□ 3.36
AP004608.1-202ENST00000533390 WRNQ14191 1432 aaPredicted RBP eCLIP35.74■■■■□ 3.31
AP004608.1-202ENST00000533390 LOC105371045A0A1W2PR82 267 aa35.71■■■■□ 3.31
AP004608.1-202ENST00000533390 FAM9AQ8IZU1 332 aaPredicted RBP35.69■■■■□ 3.3
AP004608.1-202ENST00000533390 CFTRP13569 1480 aa35.66■■■■□ 3.3
AP004608.1-202ENST00000533390 PRDM2Q13029 1718 aa35.6■■■■□ 3.29
AP004608.1-202ENST00000533390 SYNJ1O43426 1573 aa35.57■■■■□ 3.29
AP004608.1-202ENST00000533390 CADPSQ9ULU8 1353 aa35.49■■■■□ 3.27
AP004608.1-202ENST00000533390 TOP2BQ02880 1626 aa35.42■■■■□ 3.26
AP004608.1-202ENST00000533390 BIVM-ERCC5R4GMW8 1640 aa35.39■■■■□ 3.26
AP004608.1-202ENST00000533390 EEA1Q15075 1411 aa35.37■■■■□ 3.25
AP004608.1-202ENST00000533390 SOGA1O94964 1423 aa35.36■■■■□ 3.25
AP004608.1-202ENST00000533390 CUX1P39880 1505 aa35.24■■■■□ 3.23
AP004608.1-202ENST00000533390 RUSC2Q8N2Y8 1516 aa35.2■■■■□ 3.23
AP004608.1-202ENST00000533390 EHMT2Q96KQ7 1210 aa35.2■■■■□ 3.22
AP004608.1-202ENST00000533390 LAMC3Q9Y6N6 1575 aa35.16■■■■□ 3.22
AP004608.1-202ENST00000533390 CSRNP3Q8WYN3 585 aa35.15■■■■□ 3.22
AP004608.1-202ENST00000533390 FANCD2Q9BXW9 1451 aa35.13■■■■□ 3.21
AP004608.1-202ENST00000533390 NESP48681 1621 aa35.11■■■■□ 3.21
AP004608.1-202ENST00000533390 DNAJC5BQ9UF47 199 aa35.04■■■■□ 3.2
AP004608.1-202ENST00000533390 KIF21BO75037 1637 aa34.91■■■■□ 3.18
AP004608.1-202ENST00000533390 GOLGA3Q08378 1498 aa34.91■■■■□ 3.18
AP004608.1-202ENST00000533390 CEP164Q9UPV0 1460 aa34.9■■■■□ 3.18
AP004608.1-202ENST00000533390 PDS5BQ9NTI5 1447 aa34.87■■■■□ 3.17
AP004608.1-202ENST00000533390 DNMBPQ6XZF7 1577 aa34.87■■■■□ 3.17
AP004608.1-202ENST00000533390 FGD5Q6ZNL6 1462 aa34.83■■■■□ 3.17
AP004608.1-202ENST00000533390 TNIKQ9UKE5 1360 aa34.83■■■■□ 3.17
AP004608.1-202ENST00000533390 KIF27Q86VH2 1401 aa34.82■■■■□ 3.16
AP004608.1-202ENST00000533390 UBTFP17480 764 aaKnown RBP34.78■■■■□ 3.16
AP004608.1-202ENST00000533390 TOPBP1Q92547 1522 aa34.77■■■■□ 3.16
AP004608.1-202ENST00000533390 KIF21AQ7Z4S6 1674 aa34.75■■■■□ 3.15
AP004608.1-202ENST00000533390 CUX2O14529 1486 aa34.67■■■■□ 3.14
AP004608.1-202ENST00000533390 CEP162Q5TB80 1403 aa34.67■■■■□ 3.14
AP004608.1-202ENST00000533390 URB2Q14146 1524 aaKnown RBP34.65■■■■□ 3.14
AP004608.1-202ENST00000533390 RAPGEF2Q9Y4G8 1499 aa34.63■■■■□ 3.13
AP004608.1-202ENST00000533390 POLA1P09884 1462 aaPredicted RBP34.62■■■■□ 3.13
AP004608.1-202ENST00000533390 ERICH3Q5RHP9 1530 aa34.62■■■■□ 3.13
AP004608.1-202ENST00000533390 PRXQ9BXM0 1461 aa34.6■■■■□ 3.13
AP004608.1-202ENST00000533390 ABCA10Q8WWZ4 1543 aa34.52■■■■□ 3.12
AP004608.1-202ENST00000533390 RAD54L2Q9Y4B4 1467 aa34.51■■■■□ 3.11
AP004608.1-202ENST00000533390 IGF1RP08069 1367 aa34.43■■■■□ 3.1
AP004608.1-202ENST00000533390 WDR97A6NE52 1622 aa34.41■■■■□ 3.1
AP004608.1-202ENST00000533390 MRC2Q9UBG0 1479 aa34.4■■■■□ 3.1
AP004608.1-202ENST00000533390 PCGF6Q9BYE7 350 aa34.39■■■■□ 3.1
AP004608.1-202ENST00000533390 CLIP1P30622 1438 aa34.35■■■■□ 3.09
AP004608.1-202ENST00000533390 TRIM26Q12899 539 aaPredicted RBP34.33■■■■□ 3.09
AP004608.1-202ENST00000533390 CARMIL1Q5VZK9 1371 aa34.31■■■■□ 3.08
AP004608.1-202ENST00000533390 ERCC6Q03468 1493 aa34.23■■■■□ 3.07
AP004608.1-202ENST00000533390 ABCA5Q8WWZ7 1642 aa34.23■■■■□ 3.07
AP004608.1-202ENST00000533390 TARBP1Q13395 1621 aaKnown RBP34.23■■■■□ 3.07
AP004608.1-202ENST00000533390 CUL7Q14999 1698 aa34.22■■■■□ 3.07
AP004608.1-202ENST00000533390 WDR62O43379 1518 aa34.2■■■■□ 3.07
AP004608.1-202ENST00000533390 GAPVD1Q14C86 1478 aa34.15■■■■□ 3.06
AP004608.1-202ENST00000533390 TDRD9Q8NDG6 1382 aaKnown RBP34.15■■■■□ 3.06
AP004608.1-202ENST00000533390 RANGAP1P46060 587 aaPredicted RBP34.14■■■■□ 3.06
AP004608.1-202ENST00000533390 VPS8Q8N3P4 1428 aa34.08■■■■□ 3.05
AP004608.1-202ENST00000533390 THOC2Q8NI27 1593 aaKnown RBP34.05■■■■□ 3.04
AP004608.1-202ENST00000533390 PPARGC1BQ86YN6 1023 aaKnown RBP34.04■■■■□ 3.04
AP004608.1-202ENST00000533390 IFT140Q96RY7 1462 aa34.03■■■■□ 3.04
AP004608.1-202ENST00000533390 PBRM1Q86U86 1689 aa34■■■■□ 3.03
AP004608.1-202ENST00000533390 ARAP1Q96P48 1450 aa33.95■■■■□ 3.03
AP004608.1-202ENST00000533390 CTTNBP2Q8WZ74 1663 aa33.92■■■■□ 3.02
AP004608.1-202ENST00000533390 ARHGAP35Q9NRY4 1499 aa33.9■■■■□ 3.02
AP004608.1-202ENST00000533390 AQRO60306 1485 aaKnown RBP eCLIP33.89■■■■□ 3.02
AP004608.1-202ENST00000533390 APLP2Q06481 763 aa33.84■■■■□ 3.01
AP004608.1-202ENST00000533390 GRIN2BQ13224 1484 aa33.84■■■■□ 3.01
AP004608.1-202ENST00000533390 ZNF608Q9ULD9 1512 aaPredicted RBP33.81■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms