RNA–Protein interactions for RNA: ENST00000244360.6

RNF39-201, Transcript of ring finger protein 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF39, Length 2,206 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39-201ENST00000244360 NISCHQ9Y2I1 1504 aa47.11■■■■■ 5.13
RNF39-201ENST00000244360 CCDC180Q9P1Z9 1646 aa40.51■■■■■ 4.08
RNF39-201ENST00000244360 ZCCHC6Q5VYS8 1495 aaKnown RBP39.81■■■■□ 3.96
RNF39-201ENST00000244360 SHROOM4Q9ULL8 1493 aa39.24■■■■□ 3.87
RNF39-201ENST00000244360 DCAF1Q9Y4B6 1507 aa38.92■■■■□ 3.82
RNF39-201ENST00000244360 DCAF8L2P0C7V8 631 aa38.55■■■■□ 3.76
RNF39-201ENST00000244360 SUPT5HO00267 1087 aaKnown RBP38.24■■■■□ 3.71
RNF39-201ENST00000244360 MYO15BQ96JP2 1530 aa38.04■■■■□ 3.68
RNF39-201ENST00000244360 SCRIBQ14160 1630 aa37.5■■■■□ 3.59
RNF39-201ENST00000244360 NACADO15069 1562 aa37.49■■■■□ 3.59
RNF39-201ENST00000244360 ABCC9O60706 1549 aa37.47■■■■□ 3.59
RNF39-201ENST00000244360 CHIC1Q5VXU3 224 aa37.19■■■■□ 3.54
RNF39-201ENST00000244360 RSF1Q96T23 1441 aaPredicted RBP36.99■■■■□ 3.51
RNF39-201ENST00000244360 RB1CC1Q8TDY2 1594 aa36.92■■■■□ 3.5
RNF39-201ENST00000244360 CECR2Q9BXF3 1484 aa36.59■■■■□ 3.45
RNF39-201ENST00000244360 MROH2BQ7Z745 1585 aa36.48■■■■□ 3.43
RNF39-201ENST00000244360 UNC13AQ9UPW8 1703 aa36.28■■■■□ 3.4
RNF39-201ENST00000244360 BAZ1AQ9NRL2 1556 aaPredicted RBP36.26■■■■□ 3.39
RNF39-201ENST00000244360 WIZO95785 1651 aa36.23■■■■□ 3.39
RNF39-201ENST00000244360 SMARCA4P51532 1647 aa35.99■■■■□ 3.35
RNF39-201ENST00000244360 BICRAQ9NZM4 1560 aa35.89■■■■□ 3.34
RNF39-201ENST00000244360 TOP2AP11388 1531 aaKnown RBP35.84■■■■□ 3.33
RNF39-201ENST00000244360 TRIM41Q8WV44 630 aa35.84■■■■□ 3.33
RNF39-201ENST00000244360 LOC105371045A0A1W2PR82 267 aa35.83■■■■□ 3.33
RNF39-201ENST00000244360 EIF4G1Q04637 1599 aaKnown RBP35.76■■■■□ 3.32
RNF39-201ENST00000244360 SMARCA2P51531 1590 aa35.57■■■■□ 3.28
RNF39-201ENST00000244360 PABPN1Q86U42 306 aaKnown RBP eCLIP35.56■■■■□ 3.28
RNF39-201ENST00000244360 CCDC88BA6NC98 1476 aa35.53■■■■□ 3.28
RNF39-201ENST00000244360 PEG3Q9GZU2 1588 aa35.5■■■■□ 3.27
RNF39-201ENST00000244360 HRCP23327 699 aa35.48■■■■□ 3.27
RNF39-201ENST00000244360 PCGF6Q9BYE7 350 aa35.28■■■■□ 3.24
RNF39-201ENST00000244360 FAM9AQ8IZU1 332 aaPredicted RBP35.26■■■■□ 3.24
RNF39-201ENST00000244360 ATAD2BQ9ULI0 1458 aa35.15■■■■□ 3.22
RNF39-201ENST00000244360 ABCC8Q09428 1581 aa35.14■■■■□ 3.22
RNF39-201ENST00000244360 BAZ1BQ9UIG0 1483 aaKnown RBP34.98■■■■□ 3.19
RNF39-201ENST00000244360 TRIM26Q12899 539 aaPredicted RBP34.98■■■■□ 3.19
RNF39-201ENST00000244360 EEA1Q15075 1411 aa34.77■■■■□ 3.16
RNF39-201ENST00000244360 WRNQ14191 1432 aaPredicted RBP eCLIP34.75■■■■□ 3.15
RNF39-201ENST00000244360 EHMT2Q96KQ7 1210 aa34.75■■■■□ 3.15
RNF39-201ENST00000244360 SOGA1O94964 1423 aa34.72■■■■□ 3.15
RNF39-201ENST00000244360 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
RNF39-201ENST00000244360 NCAPD3P42695 1498 aa34.64■■■■□ 3.14
RNF39-201ENST00000244360 SYNJ1O43426 1573 aa34.61■■■■□ 3.13
RNF39-201ENST00000244360 RUSC2Q8N2Y8 1516 aa34.54■■■■□ 3.12
RNF39-201ENST00000244360 CSRNP3Q8WYN3 585 aa34.51■■■■□ 3.11
RNF39-201ENST00000244360 TNIKQ9UKE5 1360 aa34.48■■■■□ 3.11
RNF39-201ENST00000244360 CEP162Q5TB80 1403 aa34.4■■■■□ 3.1
RNF39-201ENST00000244360 PPARGC1BQ86YN6 1023 aaKnown RBP34.39■■■■□ 3.1
RNF39-201ENST00000244360 GOLGA3Q08378 1498 aa34.37■■■■□ 3.09
RNF39-201ENST00000244360 TOP2BQ02880 1626 aa34.34■■■■□ 3.09
RNF39-201ENST00000244360 KIF21BO75037 1637 aa34.3■■■■□ 3.08
RNF39-201ENST00000244360 BIVM-ERCC5R4GMW8 1640 aa34.28■■■■□ 3.08
RNF39-201ENST00000244360 CEP164Q9UPV0 1460 aa34.26■■■■□ 3.07
RNF39-201ENST00000244360 ZEB1P37275 1124 aaPredicted RBP34.22■■■■□ 3.07
RNF39-201ENST00000244360 CFTRP13569 1480 aa34.18■■■■□ 3.06
RNF39-201ENST00000244360 UBTFP17480 764 aaKnown RBP34.14■■■■□ 3.06
RNF39-201ENST00000244360 CUX1P39880 1505 aa34.03■■■■□ 3.04
RNF39-201ENST00000244360 PRDM2Q13029 1718 aa34.01■■■■□ 3.03
RNF39-201ENST00000244360 RAPGEF2Q9Y4G8 1499 aa33.96■■■■□ 3.03
RNF39-201ENST00000244360 CC2D2AQ9P2K1 1620 aa33.91■■■■□ 3.02
RNF39-201ENST00000244360 CLIP1P30622 1438 aa33.87■■■■□ 3.01
RNF39-201ENST00000244360 ERICH3Q5RHP9 1530 aa33.87■■■■□ 3.01
RNF39-201ENST00000244360 PRXQ9BXM0 1461 aa33.85■■■■□ 3.01
RNF39-201ENST00000244360 CADPSQ9ULU8 1353 aa33.83■■■■□ 3.01
RNF39-201ENST00000244360 KIF27Q86VH2 1401 aa33.75■■■□□ 2.99
RNF39-201ENST00000244360 VPS8Q8N3P4 1428 aa33.73■■■□□ 2.99
RNF39-201ENST00000244360 TTBK1Q5TCY1 1321 aaPredicted RBP33.56■■■□□ 2.96
RNF39-201ENST00000244360 FGD5Q6ZNL6 1462 aa33.47■■■□□ 2.95
RNF39-201ENST00000244360 FANCD2Q9BXW9 1451 aa33.47■■■□□ 2.95
RNF39-201ENST00000244360 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.47■■■□□ 2.95
RNF39-201ENST00000244360 CUX2O14529 1486 aa33.45■■■□□ 2.95
RNF39-201ENST00000244360 ARAP1Q96P48 1450 aa33.45■■■□□ 2.95
RNF39-201ENST00000244360 CCER1Q8TC90 406 aaPredicted RBP33.41■■■□□ 2.94
RNF39-201ENST00000244360 IGF1RP08069 1367 aa33.39■■■□□ 2.94
RNF39-201ENST00000244360 DNMBPQ6XZF7 1577 aa33.35■■■□□ 2.93
RNF39-201ENST00000244360 APLP2Q06481 763 aa33.32■■■□□ 2.92
RNF39-201ENST00000244360 RANGAP1P46060 587 aaPredicted RBP33.31■■■□□ 2.92
RNF39-201ENST00000244360 NESP48681 1621 aa33.25■■■□□ 2.91
RNF39-201ENST00000244360 LAMC3Q9Y6N6 1575 aa33.25■■■□□ 2.91
RNF39-201ENST00000244360 TOPBP1Q92547 1522 aa33.24■■■□□ 2.91
RNF39-201ENST00000244360 ARHGAP35Q9NRY4 1499 aa33.24■■■□□ 2.91
RNF39-201ENST00000244360 CARMIL1Q5VZK9 1371 aa33.22■■■□□ 2.91
RNF39-201ENST00000244360 ABCA10Q8WWZ4 1543 aa33.2■■■□□ 2.9
RNF39-201ENST00000244360 POLA1P09884 1462 aaPredicted RBP33.17■■■□□ 2.9
RNF39-201ENST00000244360 RAD54L2Q9Y4B4 1467 aa33.09■■■□□ 2.89
RNF39-201ENST00000244360 URB2Q14146 1524 aaKnown RBP33.03■■■□□ 2.88
RNF39-201ENST00000244360 HNRNPUL2Q1KMD3 747 aaKnown RBP33■■■□□ 2.87
RNF39-201ENST00000244360 WDR97A6NE52 1622 aa32.99■■■□□ 2.87
RNF39-201ENST00000244360 CUL7Q14999 1698 aa32.98■■■□□ 2.87
RNF39-201ENST00000244360 KANK4Q5T7N3 995 aaPredicted RBP32.98■■■□□ 2.87
RNF39-201ENST00000244360 PDS5BQ9NTI5 1447 aa32.96■■■□□ 2.87
RNF39-201ENST00000244360 MAP3K1Q13233 1512 aa32.94■■■□□ 2.86
RNF39-201ENST00000244360 RRBP1Q9P2E9 1410 aaKnown RBP32.92■■■□□ 2.86
RNF39-201ENST00000244360 ABCA5Q8WWZ7 1642 aa32.85■■■□□ 2.85
RNF39-201ENST00000244360 DNAJC5BQ9UF47 199 aa32.85■■■□□ 2.85
RNF39-201ENST00000244360 TIAM1Q13009 1591 aa32.83■■■□□ 2.85
RNF39-201ENST00000244360 KIF21AQ7Z4S6 1674 aa32.81■■■□□ 2.84
RNF39-201ENST00000244360 EFCAB5A4FU69 1503 aa32.79■■■□□ 2.84
RNF39-201ENST00000244360 FHAD1B1AJZ9 1412 aa32.79■■■□□ 2.84
RNF39-201ENST00000244360 CTTNBP2Q8WZ74 1663 aa32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms