Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC1P18827 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SDC1P18827 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC1P18827 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC1P18827 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.9■□□□□ 0.94
SDC1P18827 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC1P18827 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.9■□□□□ 0.94
SDC1P18827 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SDC1P18827 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SDC1P18827 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SDC1P18827 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
SDC1P18827 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.89■□□□□ 0.94
SDC1P18827 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.94
SDC1P18827 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SDC1P18827 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC1P18827 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC1P18827 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC1P18827 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.89■□□□□ 0.93
SDC1P18827 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SDC1P18827 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC20.89■□□□□ 0.93
SDC1P18827 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SDC1P18827 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.88■□□□□ 0.93
SDC1P18827 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SDC1P18827 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.88■□□□□ 0.93
SDC1P18827 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.88■□□□□ 0.93
SDC1P18827 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.88■□□□□ 0.93
SDC1P18827 CA15P2-201ENST00000611168 834 ntBASIC20.88■□□□□ 0.93
SDC1P18827 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.88■□□□□ 0.93
SDC1P18827 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SDC1P18827 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SDC1P18827 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.87■□□□□ 0.93
SDC1P18827 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.87■□□□□ 0.93
SDC1P18827 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.87■□□□□ 0.93
SDC1P18827 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.87■□□□□ 0.93
SDC1P18827 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.87■□□□□ 0.93
SDC1P18827 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SDC1P18827 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.87■□□□□ 0.93
SDC1P18827 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.86■□□□□ 0.93
SDC1P18827 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.86■□□□□ 0.93
SDC1P18827 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.86■□□□□ 0.93
SDC1P18827 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.86■□□□□ 0.93
SDC1P18827 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.86■□□□□ 0.93
SDC1P18827 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SDC1P18827 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SDC1P18827 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.85■□□□□ 0.93
SDC1P18827 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDC1P18827 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SDC1P18827 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.85■□□□□ 0.93
SDC1P18827 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDC1P18827 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDC1P18827 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.85■□□□□ 0.93
SDC1P18827 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SDC1P18827 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDC1P18827 AC241377.3-202ENST00000626088 1088 ntBASIC20.85■□□□□ 0.93
SDC1P18827 AC241585.3-202ENST00000628937 1088 ntBASIC20.85■□□□□ 0.93
SDC1P18827 AC245100.8-202ENST00000629247 1058 ntBASIC20.85■□□□□ 0.93
SDC1P18827 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SDC1P18827 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.85■□□□□ 0.93
SDC1P18827 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SDC1P18827 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SDC1P18827 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.85■□□□□ 0.93
SDC1P18827 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC1P18827 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
SDC1P18827 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC1P18827 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC1P18827 GUSBP5-201ENST00000418136 578 ntBASIC20.84■□□□□ 0.93
SDC1P18827 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.84■□□□□ 0.93
SDC1P18827 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.84■□□□□ 0.93
SDC1P18827 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
SDC1P18827 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC1P18827 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC1P18827 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SDC1P18827 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.84■□□□□ 0.93
SDC1P18827 FBXW4P1-201ENST00000426721 2239 ntBASIC20.84■□□□□ 0.93
SDC1P18827 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SDC1P18827 AC007375.3-201ENST00000600936 2314 ntBASIC20.83■□□□□ 0.93
SDC1P18827 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms