RNA–Protein interactions for RNA: ENST00000344280.7

CCDC38-201, Transcript of coiled-coil domain containing 38, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC38, Length 2,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-201ENST00000344280 NISCHQ9Y2I1 1504 aa45.28■■■■■ 4.84
CCDC38-201ENST00000344280 CCDC180Q9P1Z9 1646 aa38.59■■■■□ 3.77
CCDC38-201ENST00000344280 SHROOM4Q9ULL8 1493 aa38.41■■■■□ 3.74
CCDC38-201ENST00000344280 ZCCHC6Q5VYS8 1495 aaKnown RBP38.26■■■■□ 3.72
CCDC38-201ENST00000344280 DCAF8L2P0C7V8 631 aa37.56■■■■□ 3.6
CCDC38-201ENST00000344280 SUPT5HO00267 1087 aaKnown RBP37.52■■■■□ 3.6
CCDC38-201ENST00000344280 DCAF1Q9Y4B6 1507 aa37.14■■■■□ 3.54
CCDC38-201ENST00000344280 CHIC1Q5VXU3 224 aa36.39■■■■□ 3.42
CCDC38-201ENST00000344280 MYO15BQ96JP2 1530 aa36.22■■■■□ 3.39
CCDC38-201ENST00000344280 SCRIBQ14160 1630 aa36.15■■■■□ 3.38
CCDC38-201ENST00000344280 ABCC9O60706 1549 aa36.04■■■■□ 3.36
CCDC38-201ENST00000344280 RSF1Q96T23 1441 aaPredicted RBP35.75■■■■□ 3.31
CCDC38-201ENST00000344280 NACADO15069 1562 aa35.74■■■■□ 3.31
CCDC38-201ENST00000344280 CECR2Q9BXF3 1484 aa35.37■■■■□ 3.25
CCDC38-201ENST00000344280 RB1CC1Q8TDY2 1594 aa35.33■■■■□ 3.25
CCDC38-201ENST00000344280 LOC105371045A0A1W2PR82 267 aa35.31■■■■□ 3.24
CCDC38-201ENST00000344280 MROH2BQ7Z745 1585 aa35.21■■■■□ 3.23
CCDC38-201ENST00000344280 WIZO95785 1651 aa35■■■■□ 3.19
CCDC38-201ENST00000344280 PCGF6Q9BYE7 350 aa34.97■■■■□ 3.19
CCDC38-201ENST00000344280 TRIM41Q8WV44 630 aa34.95■■■■□ 3.19
CCDC38-201ENST00000344280 HRCP23327 699 aa34.78■■■■□ 3.16
CCDC38-201ENST00000344280 BAZ1AQ9NRL2 1556 aaPredicted RBP34.77■■■■□ 3.16
CCDC38-201ENST00000344280 UNC13AQ9UPW8 1703 aa34.73■■■■□ 3.15
CCDC38-201ENST00000344280 FAM9AQ8IZU1 332 aaPredicted RBP34.67■■■■□ 3.14
CCDC38-201ENST00000344280 SMARCA4P51532 1647 aa34.54■■■■□ 3.12
CCDC38-201ENST00000344280 EIF4G1Q04637 1599 aaKnown RBP34.44■■■■□ 3.1
CCDC38-201ENST00000344280 TOP2AP11388 1531 aaKnown RBP34.43■■■■□ 3.1
CCDC38-201ENST00000344280 EHMT2Q96KQ7 1210 aa34.39■■■■□ 3.1
CCDC38-201ENST00000344280 PABPN1Q86U42 306 aaKnown RBP eCLIP34.37■■■■□ 3.09
CCDC38-201ENST00000344280 TRIM26Q12899 539 aaPredicted RBP34.34■■■■□ 3.09
CCDC38-201ENST00000344280 BICRAQ9NZM4 1560 aa34.32■■■■□ 3.08
CCDC38-201ENST00000344280 CCDC88BA6NC98 1476 aa34.29■■■■□ 3.08
CCDC38-201ENST00000344280 SMARCA2P51531 1590 aa34.25■■■■□ 3.07
CCDC38-201ENST00000344280 PPARGC1BQ86YN6 1023 aaKnown RBP34.15■■■■□ 3.06
CCDC38-201ENST00000344280 ABCC8Q09428 1581 aa34.13■■■■□ 3.05
CCDC38-201ENST00000344280 PEG3Q9GZU2 1588 aa33.9■■■■□ 3.02
CCDC38-201ENST00000344280 SOGA1O94964 1423 aa33.77■■■■□ 3
CCDC38-201ENST00000344280 ATAD2BQ9ULI0 1458 aa33.72■■■□□ 2.99
CCDC38-201ENST00000344280 RUSC2Q8N2Y8 1516 aa33.62■■■□□ 2.97
CCDC38-201ENST00000344280 BAZ1BQ9UIG0 1483 aaKnown RBP33.59■■■□□ 2.97
CCDC38-201ENST00000344280 WRNQ14191 1432 aaPredicted RBP eCLIP33.56■■■□□ 2.96
CCDC38-201ENST00000344280 CSRNP3Q8WYN3 585 aa33.5■■■□□ 2.95
CCDC38-201ENST00000344280 EEA1Q15075 1411 aa33.47■■■□□ 2.95
CCDC38-201ENST00000344280 CEP162Q5TB80 1403 aa33.45■■■□□ 2.95
CCDC38-201ENST00000344280 SYNJ1O43426 1573 aa33.44■■■□□ 2.94
CCDC38-201ENST00000344280 TNIKQ9UKE5 1360 aa33.41■■■□□ 2.94
CCDC38-201ENST00000344280 ZEB1P37275 1124 aaPredicted RBP33.4■■■□□ 2.94
CCDC38-201ENST00000344280 UBTFP17480 764 aaKnown RBP33.32■■■□□ 2.93
CCDC38-201ENST00000344280 GOLGA3Q08378 1498 aa33.26■■■□□ 2.91
CCDC38-201ENST00000344280 TTBK1Q5TCY1 1321 aaPredicted RBP33.21■■■□□ 2.91
CCDC38-201ENST00000344280 NCAPD3P42695 1498 aa33.1■■■□□ 2.89
CCDC38-201ENST00000344280 CEP164Q9UPV0 1460 aa33.09■■■□□ 2.89
CCDC38-201ENST00000344280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.07■■■□□ 2.88
CCDC38-201ENST00000344280 KIF21BO75037 1637 aa33.06■■■□□ 2.88
CCDC38-201ENST00000344280 HMGXB3Q12766 1538 aa33.06■■■□□ 2.88
CCDC38-201ENST00000344280 TOP2BQ02880 1626 aa33.03■■■□□ 2.88
CCDC38-201ENST00000344280 RAPGEF2Q9Y4G8 1499 aa32.95■■■□□ 2.86
CCDC38-201ENST00000344280 BIVM-ERCC5R4GMW8 1640 aa32.91■■■□□ 2.86
CCDC38-201ENST00000344280 CCER1Q8TC90 406 aaPredicted RBP32.9■■■□□ 2.86
CCDC38-201ENST00000344280 CLIP1P30622 1438 aa32.88■■■□□ 2.85
CCDC38-201ENST00000344280 CUX1P39880 1505 aa32.79■■■□□ 2.84
CCDC38-201ENST00000344280 CFTRP13569 1480 aa32.77■■■□□ 2.84
CCDC38-201ENST00000344280 RANGAP1P46060 587 aaPredicted RBP32.75■■■□□ 2.83
CCDC38-201ENST00000344280 VPS8Q8N3P4 1428 aa32.7■■■□□ 2.83
CCDC38-201ENST00000344280 PRXQ9BXM0 1461 aa32.65■■■□□ 2.82
CCDC38-201ENST00000344280 ERICH3Q5RHP9 1530 aa32.58■■■□□ 2.81
CCDC38-201ENST00000344280 KIF27Q86VH2 1401 aa32.53■■■□□ 2.8
CCDC38-201ENST00000344280 APLP2Q06481 763 aa32.47■■■□□ 2.79
CCDC38-201ENST00000344280 PRDM2Q13029 1718 aa32.46■■■□□ 2.79
CCDC38-201ENST00000344280 HNRNPUL2Q1KMD3 747 aaKnown RBP32.44■■■□□ 2.78
CCDC38-201ENST00000344280 CADPSQ9ULU8 1353 aa32.44■■■□□ 2.78
CCDC38-201ENST00000344280 ARAP1Q96P48 1450 aa32.41■■■□□ 2.78
CCDC38-201ENST00000344280 CC2D2AQ9P2K1 1620 aa32.4■■■□□ 2.78
CCDC38-201ENST00000344280 CUX2O14529 1486 aa32.29■■■□□ 2.76
CCDC38-201ENST00000344280 IGF1RP08069 1367 aa32.24■■■□□ 2.75
CCDC38-201ENST00000344280 FGD5Q6ZNL6 1462 aa32.23■■■□□ 2.75
CCDC38-201ENST00000344280 KANK4Q5T7N3 995 aaPredicted RBP32.22■■■□□ 2.75
CCDC38-201ENST00000344280 ARHGAP35Q9NRY4 1499 aa32.19■■■□□ 2.74
CCDC38-201ENST00000344280 FANCD2Q9BXW9 1451 aa32.13■■■□□ 2.73
CCDC38-201ENST00000344280 DIEXFQ68CQ4 756 aaKnown RBP32.11■■■□□ 2.73
CCDC38-201ENST00000344280 CARMIL1Q5VZK9 1371 aa32.07■■■□□ 2.73
CCDC38-201ENST00000344280 NESP48681 1621 aa32.03■■■□□ 2.72
CCDC38-201ENST00000344280 RAD54L2Q9Y4B4 1467 aa31.96■■■□□ 2.71
CCDC38-201ENST00000344280 ZNF316A6NFI3 1004 aaPredicted RBP31.95■■■□□ 2.71
CCDC38-201ENST00000344280 DNMBPQ6XZF7 1577 aa31.93■■■□□ 2.7
CCDC38-201ENST00000344280 RRBP1Q9P2E9 1410 aaKnown RBP31.91■■■□□ 2.7
CCDC38-201ENST00000344280 TOPBP1Q92547 1522 aa31.9■■■□□ 2.7
CCDC38-201ENST00000344280 POLA1P09884 1462 aaPredicted RBP31.89■■■□□ 2.7
CCDC38-201ENST00000344280 SCAF1Q9H7N4 1312 aaKnown RBP31.88■■■□□ 2.69
CCDC38-201ENST00000344280 ABCA10Q8WWZ4 1543 aa31.84■■■□□ 2.69
CCDC38-201ENST00000344280 DHX57Q6P158 1386 aaKnown RBP31.8■■■□□ 2.68
CCDC38-201ENST00000344280 CCNB3Q8WWL7 1395 aa31.79■■■□□ 2.68
CCDC38-201ENST00000344280 TIAM1Q13009 1591 aa31.76■■■□□ 2.67
CCDC38-201ENST00000344280 P3H3Q8IVL6 736 aa31.75■■■□□ 2.67
CCDC38-201ENST00000344280 DNAJC5BQ9UF47 199 aa31.75■■■□□ 2.67
CCDC38-201ENST00000344280 URB2Q14146 1524 aaKnown RBP31.71■■■□□ 2.67
CCDC38-201ENST00000344280 ITGAEP38570 1179 aa31.69■■■□□ 2.66
CCDC38-201ENST00000344280 LAMC3Q9Y6N6 1575 aa31.69■■■□□ 2.66
CCDC38-201ENST00000344280 MAP3K1Q13233 1512 aa31.69■■■□□ 2.66
CCDC38-201ENST00000344280 NEUROD1Q13562 356 aa31.68■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms