RNA–Protein interactions for RNA: ENST00000378980.7

CNTFR-202, Transcript of ciliary neurotrophic factor receptor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNTFR, Length 2,052 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNTFR-202ENST00000378980 NISCHQ9Y2I1 1504 aa46.43■■■■■ 5.02
CNTFR-202ENST00000378980 CCDC180Q9P1Z9 1646 aa40.02■■■■■ 4
CNTFR-202ENST00000378980 ZCCHC6Q5VYS8 1495 aaKnown RBP39.2■■■■□ 3.87
CNTFR-202ENST00000378980 SHROOM4Q9ULL8 1493 aa38.67■■■■□ 3.78
CNTFR-202ENST00000378980 DCAF1Q9Y4B6 1507 aa38.31■■■■□ 3.72
CNTFR-202ENST00000378980 DCAF8L2P0C7V8 631 aa38.14■■■■□ 3.7
CNTFR-202ENST00000378980 SUPT5HO00267 1087 aaKnown RBP37.61■■■■□ 3.61
CNTFR-202ENST00000378980 MYO15BQ96JP2 1530 aa37.49■■■■□ 3.59
CNTFR-202ENST00000378980 ABCC9O60706 1549 aa37.15■■■■□ 3.54
CNTFR-202ENST00000378980 SCRIBQ14160 1630 aa37.06■■■■□ 3.52
CNTFR-202ENST00000378980 NACADO15069 1562 aa37.04■■■■□ 3.52
CNTFR-202ENST00000378980 RB1CC1Q8TDY2 1594 aa36.54■■■■□ 3.44
CNTFR-202ENST00000378980 CHIC1Q5VXU3 224 aa36.44■■■■□ 3.42
CNTFR-202ENST00000378980 RSF1Q96T23 1441 aaPredicted RBP36.4■■■■□ 3.42
CNTFR-202ENST00000378980 CECR2Q9BXF3 1484 aa36.09■■■■□ 3.37
CNTFR-202ENST00000378980 UNC13AQ9UPW8 1703 aa35.99■■■■□ 3.35
CNTFR-202ENST00000378980 MROH2BQ7Z745 1585 aa35.97■■■■□ 3.35
CNTFR-202ENST00000378980 BAZ1AQ9NRL2 1556 aaPredicted RBP35.76■■■■□ 3.32
CNTFR-202ENST00000378980 WIZO95785 1651 aa35.76■■■■□ 3.31
CNTFR-202ENST00000378980 SMARCA4P51532 1647 aa35.53■■■■□ 3.28
CNTFR-202ENST00000378980 BICRAQ9NZM4 1560 aa35.51■■■■□ 3.27
CNTFR-202ENST00000378980 TOP2AP11388 1531 aaKnown RBP35.32■■■■□ 3.25
CNTFR-202ENST00000378980 PABPN1Q86U42 306 aaKnown RBP eCLIP35.25■■■■□ 3.23
CNTFR-202ENST00000378980 TRIM41Q8WV44 630 aa35.23■■■■□ 3.23
CNTFR-202ENST00000378980 EIF4G1Q04637 1599 aaKnown RBP35.17■■■■□ 3.22
CNTFR-202ENST00000378980 LOC105371045A0A1W2PR82 267 aa35.15■■■■□ 3.22
CNTFR-202ENST00000378980 SMARCA2P51531 1590 aa35.06■■■■□ 3.2
CNTFR-202ENST00000378980 CCDC88BA6NC98 1476 aa35.01■■■■□ 3.2
CNTFR-202ENST00000378980 PEG3Q9GZU2 1588 aa35■■■■□ 3.19
CNTFR-202ENST00000378980 FAM9AQ8IZU1 332 aaPredicted RBP34.7■■■■□ 3.15
CNTFR-202ENST00000378980 ATAD2BQ9ULI0 1458 aa34.7■■■■□ 3.15
CNTFR-202ENST00000378980 ABCC8Q09428 1581 aa34.64■■■■□ 3.14
CNTFR-202ENST00000378980 BAZ1BQ9UIG0 1483 aaKnown RBP34.56■■■■□ 3.12
CNTFR-202ENST00000378980 PCGF6Q9BYE7 350 aa34.49■■■■□ 3.11
CNTFR-202ENST00000378980 EHMT2Q96KQ7 1210 aa34.26■■■■□ 3.07
CNTFR-202ENST00000378980 HMGXB3Q12766 1538 aa34.24■■■■□ 3.07
CNTFR-202ENST00000378980 WRNQ14191 1432 aaPredicted RBP eCLIP34.22■■■■□ 3.07
CNTFR-202ENST00000378980 HRCP23327 699 aa34.21■■■■□ 3.07
CNTFR-202ENST00000378980 NCAPD3P42695 1498 aa34.19■■■■□ 3.06
CNTFR-202ENST00000378980 TRIM26Q12899 539 aaPredicted RBP34.18■■■■□ 3.06
CNTFR-202ENST00000378980 SOGA1O94964 1423 aa34.15■■■■□ 3.06
CNTFR-202ENST00000378980 EEA1Q15075 1411 aa34.14■■■■□ 3.06
CNTFR-202ENST00000378980 SYNJ1O43426 1573 aa34.11■■■■□ 3.05
CNTFR-202ENST00000378980 RUSC2Q8N2Y8 1516 aa33.99■■■■□ 3.03
CNTFR-202ENST00000378980 CSRNP3Q8WYN3 585 aa33.91■■■■□ 3.02
CNTFR-202ENST00000378980 TOP2BQ02880 1626 aa33.84■■■■□ 3.01
CNTFR-202ENST00000378980 TNIKQ9UKE5 1360 aa33.83■■■■□ 3.01
CNTFR-202ENST00000378980 BIVM-ERCC5R4GMW8 1640 aa33.8■■■■□ 3
CNTFR-202ENST00000378980 GOLGA3Q08378 1498 aa33.78■■■■□ 3
CNTFR-202ENST00000378980 CEP162Q5TB80 1403 aa33.77■■■■□ 3
CNTFR-202ENST00000378980 CFTRP13569 1480 aa33.72■■■□□ 2.99
CNTFR-202ENST00000378980 KIF21BO75037 1637 aa33.72■■■□□ 2.99
CNTFR-202ENST00000378980 CEP164Q9UPV0 1460 aa33.67■■■□□ 2.98
CNTFR-202ENST00000378980 PRDM2Q13029 1718 aa33.65■■■□□ 2.98
CNTFR-202ENST00000378980 CC2D2AQ9P2K1 1620 aa33.62■■■□□ 2.97
CNTFR-202ENST00000378980 UBTFP17480 764 aaKnown RBP33.6■■■□□ 2.97
CNTFR-202ENST00000378980 CUX1P39880 1505 aa33.57■■■□□ 2.96
CNTFR-202ENST00000378980 PPARGC1BQ86YN6 1023 aaKnown RBP33.47■■■□□ 2.95
CNTFR-202ENST00000378980 RAPGEF2Q9Y4G8 1499 aa33.41■■■□□ 2.94
CNTFR-202ENST00000378980 CADPSQ9ULU8 1353 aa33.41■■■□□ 2.94
CNTFR-202ENST00000378980 ERICH3Q5RHP9 1530 aa33.3■■■□□ 2.92
CNTFR-202ENST00000378980 CLIP1P30622 1438 aa33.28■■■□□ 2.92
CNTFR-202ENST00000378980 PRXQ9BXM0 1461 aa33.28■■■□□ 2.92
CNTFR-202ENST00000378980 KIF27Q86VH2 1401 aa33.25■■■□□ 2.91
CNTFR-202ENST00000378980 ZEB1P37275 1124 aaPredicted RBP33.22■■■□□ 2.91
CNTFR-202ENST00000378980 VPS8Q8N3P4 1428 aa33.11■■■□□ 2.89
CNTFR-202ENST00000378980 FANCD2Q9BXW9 1451 aa33.08■■■□□ 2.89
CNTFR-202ENST00000378980 FGD5Q6ZNL6 1462 aa33.04■■■□□ 2.88
CNTFR-202ENST00000378980 TTBK1Q5TCY1 1321 aaPredicted RBP33.03■■■□□ 2.88
CNTFR-202ENST00000378980 CUX2O14529 1486 aa33■■■□□ 2.87
CNTFR-202ENST00000378980 DNMBPQ6XZF7 1577 aa32.94■■■□□ 2.86
CNTFR-202ENST00000378980 NESP48681 1621 aa32.93■■■□□ 2.86
CNTFR-202ENST00000378980 LAMC3Q9Y6N6 1575 aa32.9■■■□□ 2.86
CNTFR-202ENST00000378980 IGF1RP08069 1367 aa32.88■■■□□ 2.85
CNTFR-202ENST00000378980 RANGAP1P46060 587 aaPredicted RBP32.88■■■□□ 2.85
CNTFR-202ENST00000378980 ARAP1Q96P48 1450 aa32.87■■■□□ 2.85
CNTFR-202ENST00000378980 TOPBP1Q92547 1522 aa32.83■■■□□ 2.85
CNTFR-202ENST00000378980 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.78■■■□□ 2.84
CNTFR-202ENST00000378980 APLP2Q06481 763 aa32.76■■■□□ 2.84
CNTFR-202ENST00000378980 POLA1P09884 1462 aaPredicted RBP32.75■■■□□ 2.83
CNTFR-202ENST00000378980 ABCA10Q8WWZ4 1543 aa32.73■■■□□ 2.83
CNTFR-202ENST00000378980 CARMIL1Q5VZK9 1371 aa32.72■■■□□ 2.83
CNTFR-202ENST00000378980 CCER1Q8TC90 406 aaPredicted RBP32.71■■■□□ 2.83
CNTFR-202ENST00000378980 ARHGAP35Q9NRY4 1499 aa32.69■■■□□ 2.82
CNTFR-202ENST00000378980 RAD54L2Q9Y4B4 1467 aa32.69■■■□□ 2.82
CNTFR-202ENST00000378980 URB2Q14146 1524 aaKnown RBP32.65■■■□□ 2.82
CNTFR-202ENST00000378980 PDS5BQ9NTI5 1447 aa32.6■■■□□ 2.81
CNTFR-202ENST00000378980 WDR97A6NE52 1622 aa32.6■■■□□ 2.81
CNTFR-202ENST00000378980 DNAJC5BQ9UF47 199 aa32.59■■■□□ 2.81
CNTFR-202ENST00000378980 KIF21AQ7Z4S6 1674 aa32.54■■■□□ 2.8
CNTFR-202ENST00000378980 CUL7Q14999 1698 aa32.54■■■□□ 2.8
CNTFR-202ENST00000378980 ABCA5Q8WWZ7 1642 aa32.43■■■□□ 2.78
CNTFR-202ENST00000378980 KANK4Q5T7N3 995 aaPredicted RBP32.41■■■□□ 2.78
CNTFR-202ENST00000378980 HNRNPUL2Q1KMD3 747 aaKnown RBP32.4■■■□□ 2.78
CNTFR-202ENST00000378980 CTTNBP2Q8WZ74 1663 aa32.37■■■□□ 2.77
CNTFR-202ENST00000378980 MAP3K1Q13233 1512 aa32.32■■■□□ 2.77
CNTFR-202ENST00000378980 GAPVD1Q14C86 1478 aa32.29■■■□□ 2.76
CNTFR-202ENST00000378980 TIAM1Q13009 1591 aa32.29■■■□□ 2.76
CNTFR-202ENST00000378980 TARBP1Q13395 1621 aaKnown RBP32.28■■■□□ 2.76
CNTFR-202ENST00000378980 EFCAB5A4FU69 1503 aa32.28■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms