Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.23■■■□□ 2.43
VCANP13611 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
VCANP13611 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.21■■■□□ 2.43
VCANP13611 MIR3665-201ENST00000578708 105 ntBASIC30.19■■■□□ 2.42
VCANP13611 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
VCANP13611 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
VCANP13611 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
VCANP13611 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
VCANP13611 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.12■■■□□ 2.41
VCANP13611 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.11■■■□□ 2.41
VCANP13611 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
VCANP13611 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
VCANP13611 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.08■■■□□ 2.41
VCANP13611 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
VCANP13611 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.05■■■□□ 2.4
VCANP13611 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.05■■■□□ 2.4
VCANP13611 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.04■■■□□ 2.4
VCANP13611 HSD17B1P1-201ENST00000590052 955 ntBASIC30.03■■■□□ 2.4
VCANP13611 DUX4L28-201ENST00000623687 678 ntBASIC30.03■■■□□ 2.4
VCANP13611 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.03■■■□□ 2.4
VCANP13611 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
VCANP13611 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.4
VCANP13611 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30■■■□□ 2.39
VCANP13611 AC044849.2-201ENST00000606596 710 ntBASIC30■■■□□ 2.39
VCANP13611 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30■■■□□ 2.39
VCANP13611 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30■■■□□ 2.39
VCANP13611 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
VCANP13611 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.97■■■□□ 2.39
VCANP13611 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.93■■■□□ 2.38
VCANP13611 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.92■■■□□ 2.38
VCANP13611 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
VCANP13611 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
VCANP13611 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
VCANP13611 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
VCANP13611 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
VCANP13611 MIR639-201ENST00000384974 98 ntBASIC29.82■■■□□ 2.36
VCANP13611 ZNRF2P2-203ENST00000454624 420 ntBASIC29.81■■■□□ 2.36
VCANP13611 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.8■■■□□ 2.36
VCANP13611 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
VCANP13611 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.77■■■□□ 2.36
VCANP13611 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
VCANP13611 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
VCANP13611 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.73■■■□□ 2.35
VCANP13611 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.72■■■□□ 2.35
VCANP13611 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
VCANP13611 MIR762-201ENST00000390236 83 ntBASIC29.7■■■□□ 2.34
VCANP13611 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC29.68■■■□□ 2.34
VCANP13611 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
VCANP13611 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.68■■■□□ 2.34
VCANP13611 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.67■■■□□ 2.34
VCANP13611 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
VCANP13611 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.67■■■□□ 2.34
VCANP13611 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.66■■■□□ 2.34
VCANP13611 AC005559.1-201ENST00000589661 871 ntBASIC29.66■■■□□ 2.34
VCANP13611 AL133380.1-201ENST00000506013 324 ntBASIC29.66■■■□□ 2.34
VCANP13611 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
VCANP13611 AC145285.7-201ENST00000614819 1539 ntBASIC29.64■■■□□ 2.34
VCANP13611 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.64■■■□□ 2.33
VCANP13611 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.63■■■□□ 2.33
VCANP13611 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.62■■■□□ 2.33
VCANP13611 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.6■■■□□ 2.33
VCANP13611 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
VCANP13611 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.56■■■□□ 2.32
VCANP13611 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.55■■■□□ 2.32
VCANP13611 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
VCANP13611 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.55■■■□□ 2.32
VCANP13611 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
VCANP13611 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.53■■■□□ 2.32
VCANP13611 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
VCANP13611 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.52■■■□□ 2.32
VCANP13611 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
VCANP13611 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.5■■■□□ 2.31
VCANP13611 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.49■■■□□ 2.31
VCANP13611 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.47■■■□□ 2.31
VCANP13611 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
VCANP13611 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.46■■■□□ 2.31
VCANP13611 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.46■■■□□ 2.31
VCANP13611 MIR3648-2-201ENST00000581792 180 ntBASIC29.44■■■□□ 2.3
VCANP13611 MIR3648-1-201ENST00000615959 180 ntBASIC29.44■■■□□ 2.3
VCANP13611 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.43■■■□□ 2.3
VCANP13611 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.43■■■□□ 2.3
VCANP13611 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
VCANP13611 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
VCANP13611 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
VCANP13611 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
VCANP13611 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
VCANP13611 AC016575.1-201ENST00000607026 382 ntBASIC29.39■■■□□ 2.29
VCANP13611 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
VCANP13611 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
VCANP13611 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
VCANP13611 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.36■■■□□ 2.29
VCANP13611 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
VCANP13611 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.35■■■□□ 2.29
VCANP13611 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.34■■■□□ 2.29
VCANP13611 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
VCANP13611 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC29.33■■■□□ 2.29
VCANP13611 CR559946.2-201ENST00000623684 991 ntBASIC29.32■■■□□ 2.28
VCANP13611 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
VCANP13611 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
VCANP13611 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms