Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.98■■■□□ 2.23
COL4A2P08572 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.97■■■□□ 2.23
COL4A2P08572 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
COL4A2P08572 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.91■■■□□ 2.22
COL4A2P08572 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.89■■■□□ 2.21
COL4A2P08572 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
COL4A2P08572 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
COL4A2P08572 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
COL4A2P08572 AP006261.1-201ENST00000584783 668 ntBASIC28.86■■■□□ 2.21
COL4A2P08572 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.85■■■□□ 2.21
COL4A2P08572 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC28.81■■■□□ 2.2
COL4A2P08572 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.81■■■□□ 2.2
COL4A2P08572 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.8■■■□□ 2.2
COL4A2P08572 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
COL4A2P08572 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.77■■■□□ 2.2
COL4A2P08572 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
COL4A2P08572 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.71■■■□□ 2.19
COL4A2P08572 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.71■■■□□ 2.19
COL4A2P08572 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
COL4A2P08572 DUX4L28-201ENST00000623687 678 ntBASIC28.69■■■□□ 2.18
COL4A2P08572 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.69■■■□□ 2.18
COL4A2P08572 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.68■■■□□ 2.18
COL4A2P08572 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
COL4A2P08572 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.67■■■□□ 2.18
COL4A2P08572 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
COL4A2P08572 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.66■■■□□ 2.18
COL4A2P08572 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.65■■■□□ 2.18
COL4A2P08572 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.65■■■□□ 2.18
COL4A2P08572 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.65■■■□□ 2.18
COL4A2P08572 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL4A2P08572 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
COL4A2P08572 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
COL4A2P08572 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL4A2P08572 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.62■■■□□ 2.17
COL4A2P08572 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A2P08572 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
COL4A2P08572 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.6■■■□□ 2.17
COL4A2P08572 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.59■■■□□ 2.17
COL4A2P08572 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.58■■■□□ 2.17
COL4A2P08572 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL4A2P08572 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL4A2P08572 MIR3665-201ENST00000578708 105 ntBASIC28.57■■■□□ 2.16
COL4A2P08572 AC087741.3-201ENST00000624270 1347 ntBASIC28.57■■■□□ 2.16
COL4A2P08572 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL4A2P08572 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL4A2P08572 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
COL4A2P08572 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL4A2P08572 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL4A2P08572 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
COL4A2P08572 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL4A2P08572 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL4A2P08572 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.52■■■□□ 2.16
COL4A2P08572 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL4A2P08572 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
COL4A2P08572 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL4A2P08572 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
COL4A2P08572 AC044849.2-201ENST00000606596 710 ntBASIC28.49■■■□□ 2.15
COL4A2P08572 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
COL4A2P08572 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
COL4A2P08572 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
COL4A2P08572 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.46■■■□□ 2.15
COL4A2P08572 AC005559.1-201ENST00000589661 871 ntBASIC28.46■■■□□ 2.15
COL4A2P08572 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
COL4A2P08572 MIR762-201ENST00000390236 83 ntBASIC28.45■■■□□ 2.14
COL4A2P08572 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
COL4A2P08572 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
COL4A2P08572 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.44■■■□□ 2.14
COL4A2P08572 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
COL4A2P08572 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.43■■■□□ 2.14
COL4A2P08572 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.42■■■□□ 2.14
COL4A2P08572 MIR7108-201ENST00000614319 87 ntBASIC28.41■■■□□ 2.14
COL4A2P08572 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.4■■■□□ 2.14
COL4A2P08572 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
COL4A2P08572 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.38■■■□□ 2.13
COL4A2P08572 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.38■■■□□ 2.13
COL4A2P08572 ABHD17AP4-201ENST00000411545 909 ntBASIC28.36■■■□□ 2.13
COL4A2P08572 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.35■■■□□ 2.13
COL4A2P08572 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
COL4A2P08572 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
COL4A2P08572 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.32■■■□□ 2.12
COL4A2P08572 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
COL4A2P08572 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.29■■■□□ 2.12
COL4A2P08572 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
COL4A2P08572 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.27■■■□□ 2.12
COL4A2P08572 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
COL4A2P08572 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
COL4A2P08572 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.26■■■□□ 2.11
COL4A2P08572 HLA-V-202ENST00000446817 847 ntBASIC28.25■■■□□ 2.11
COL4A2P08572 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.25■■■□□ 2.11
COL4A2P08572 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL4A2P08572 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
COL4A2P08572 WASH5P-204ENST00000632292 975 ntBASIC28.21■■■□□ 2.11
COL4A2P08572 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
COL4A2P08572 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.1
COL4A2P08572 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.2■■■□□ 2.1
COL4A2P08572 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL4A2P08572 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.18■■■□□ 2.1
COL4A2P08572 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL4A2P08572 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC28.17■■■□□ 2.1
COL4A2P08572 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.16■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms