Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC33.35■■■□□ 2.93
COL2A1P02458 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
COL2A1P02458 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC33.34■■■□□ 2.93
COL2A1P02458 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC33.32■■■□□ 2.92
COL2A1P02458 CAHM-201ENST00000604200 896 ntBASIC33.31■■■□□ 2.92
COL2A1P02458 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
COL2A1P02458 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
COL2A1P02458 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC33.29■■■□□ 2.92
COL2A1P02458 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
COL2A1P02458 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC33.27■■■□□ 2.92
COL2A1P02458 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC33.27■■■□□ 2.92
COL2A1P02458 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
COL2A1P02458 AL391121.1-201ENST00000607967 1349 ntBASIC33.25■■■□□ 2.91
COL2A1P02458 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC33.25■■■□□ 2.91
COL2A1P02458 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC33.24■■■□□ 2.91
COL2A1P02458 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.23■■■□□ 2.91
COL2A1P02458 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
COL2A1P02458 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC33.21■■■□□ 2.91
COL2A1P02458 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
COL2A1P02458 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC33.17■■■□□ 2.9
COL2A1P02458 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
COL2A1P02458 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL2A1P02458 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
COL2A1P02458 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC33.14■■■□□ 2.9
COL2A1P02458 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL2A1P02458 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC33.12■■■□□ 2.89
COL2A1P02458 RPS2P35-201ENST00000443417 897 ntBASIC33.06■■■□□ 2.88
COL2A1P02458 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC33.06■■■□□ 2.88
COL2A1P02458 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC33.05■■■□□ 2.88
COL2A1P02458 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC33.05■■■□□ 2.88
COL2A1P02458 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC33.04■■■□□ 2.88
COL2A1P02458 AL162393.1-201ENST00000437852 946 ntBASIC33.02■■■□□ 2.88
COL2A1P02458 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC33.02■■■□□ 2.88
COL2A1P02458 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC33.01■■■□□ 2.88
COL2A1P02458 AP006261.1-201ENST00000584783 668 ntBASIC33■■■□□ 2.87
COL2A1P02458 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
COL2A1P02458 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.99■■■□□ 2.87
COL2A1P02458 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.99■■■□□ 2.87
COL2A1P02458 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.99■■■□□ 2.87
COL2A1P02458 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
COL2A1P02458 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.98■■■□□ 2.87
COL2A1P02458 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
COL2A1P02458 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
COL2A1P02458 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
COL2A1P02458 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
COL2A1P02458 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.9■■■□□ 2.86
COL2A1P02458 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.88■■■□□ 2.85
COL2A1P02458 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
COL2A1P02458 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.86■■■□□ 2.85
COL2A1P02458 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL2A1P02458 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.85■■■□□ 2.85
COL2A1P02458 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
COL2A1P02458 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
COL2A1P02458 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
COL2A1P02458 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.79■■■□□ 2.84
COL2A1P02458 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
COL2A1P02458 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.78■■■□□ 2.84
COL2A1P02458 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.75■■■□□ 2.83
COL2A1P02458 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.75■■■□□ 2.83
COL2A1P02458 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL2A1P02458 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
COL2A1P02458 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
COL2A1P02458 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.71■■■□□ 2.83
COL2A1P02458 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
COL2A1P02458 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.71■■■□□ 2.83
COL2A1P02458 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
COL2A1P02458 MIR3665-201ENST00000578708 105 ntBASIC32.7■■■□□ 2.83
COL2A1P02458 DENR-202ENST00000455982 1052 ntTSL 5 BASIC32.69■■■□□ 2.82
COL2A1P02458 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL2A1P02458 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
COL2A1P02458 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.67■■■□□ 2.82
COL2A1P02458 DUX4L28-201ENST00000623687 678 ntBASIC32.67■■■□□ 2.82
COL2A1P02458 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
COL2A1P02458 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
COL2A1P02458 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.65■■■□□ 2.82
COL2A1P02458 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
COL2A1P02458 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.64■■■□□ 2.82
COL2A1P02458 MIR762-201ENST00000390236 83 ntBASIC32.64■■■□□ 2.82
COL2A1P02458 WASH5P-204ENST00000632292 975 ntBASIC32.64■■■□□ 2.82
COL2A1P02458 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.63■■■□□ 2.81
COL2A1P02458 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC32.59■■■□□ 2.81
COL2A1P02458 AC087741.3-201ENST00000624270 1347 ntBASIC32.58■■■□□ 2.81
COL2A1P02458 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
COL2A1P02458 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
COL2A1P02458 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC32.55■■■□□ 2.8
COL2A1P02458 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
COL2A1P02458 AC005559.1-201ENST00000589661 871 ntBASIC32.54■■■□□ 2.8
COL2A1P02458 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32.53■■■□□ 2.8
COL2A1P02458 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
COL2A1P02458 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.51■■■□□ 2.8
COL2A1P02458 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL2A1P02458 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32.47■■■□□ 2.79
COL2A1P02458 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.46■■■□□ 2.79
COL2A1P02458 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC32.46■■■□□ 2.79
COL2A1P02458 AC044849.2-201ENST00000606596 710 ntBASIC32.46■■■□□ 2.79
COL2A1P02458 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.45■■■□□ 2.79
COL2A1P02458 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC32.45■■■□□ 2.79
COL2A1P02458 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
COL2A1P02458 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.45■■■□□ 2.78
COL2A1P02458 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms