Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZIC3O60481 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZIC3O60481 UNC93B3-201ENST00000308076 687 ntBASIC20.33■□□□□ 0.85
ZIC3O60481 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.33■□□□□ 0.85
ZIC3O60481 AC092171.4-201ENST00000609130 632 ntBASIC20.33■□□□□ 0.85
ZIC3O60481 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ZIC3O60481 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZIC3O60481 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ZIC3O60481 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ZIC3O60481 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
ZIC3O60481 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
ZIC3O60481 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.32■□□□□ 0.84
ZIC3O60481 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZIC3O60481 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZIC3O60481 DUX4L19-201ENST00000557448 1267 ntBASIC20.32■□□□□ 0.84
ZIC3O60481 AL139246.5-201ENST00000606645 996 ntBASIC20.32■□□□□ 0.84
ZIC3O60481 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ZIC3O60481 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZIC3O60481 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZIC3O60481 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ZIC3O60481 FP325331.1-202ENST00000623531 1380 ntBASIC20.32■□□□□ 0.84
ZIC3O60481 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZIC3O60481 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZIC3O60481 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.31■□□□□ 0.84
ZIC3O60481 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZIC3O60481 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ZIC3O60481 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZIC3O60481 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ZIC3O60481 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
ZIC3O60481 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
ZIC3O60481 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 AC006455.2-201ENST00000429931 906 ntBASIC20.3■□□□□ 0.84
ZIC3O60481 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.3■□□□□ 0.84
ZIC3O60481 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ZIC3O60481 AC144652.1-201ENST00000609974 1624 ntBASIC20.3■□□□□ 0.84
ZIC3O60481 SYT6-210ENST00000641643 1587 ntBASIC20.29■□□□□ 0.84
ZIC3O60481 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.29■□□□□ 0.84
ZIC3O60481 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZIC3O60481 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZIC3O60481 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZIC3O60481 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ZIC3O60481 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.29■□□□□ 0.84
ZIC3O60481 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZIC3O60481 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
ZIC3O60481 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ZIC3O60481 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.28■□□□□ 0.84
ZIC3O60481 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.28■□□□□ 0.84
ZIC3O60481 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZIC3O60481 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.28■□□□□ 0.84
ZIC3O60481 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ZIC3O60481 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.28■□□□□ 0.84
ZIC3O60481 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ZIC3O60481 SERBP1P1-201ENST00000396021 1160 ntBASIC20.28■□□□□ 0.84
ZIC3O60481 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.28■□□□□ 0.84
ZIC3O60481 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZIC3O60481 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.28■□□□□ 0.84
ZIC3O60481 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.28■□□□□ 0.84
ZIC3O60481 AC009086.3-201ENST00000623486 1008 ntBASIC20.28■□□□□ 0.84
ZIC3O60481 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZIC3O60481 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZIC3O60481 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZIC3O60481 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZIC3O60481 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZIC3O60481 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
ZIC3O60481 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.27■□□□□ 0.84
ZIC3O60481 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZIC3O60481 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZIC3O60481 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZIC3O60481 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ZIC3O60481 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZIC3O60481 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.27■□□□□ 0.84
ZIC3O60481 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZIC3O60481 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.27■□□□□ 0.84
ZIC3O60481 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZIC3O60481 PBX2P1-201ENST00000493219 1291 ntBASIC20.27■□□□□ 0.84
ZIC3O60481 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.27■□□□□ 0.84
ZIC3O60481 AL136162.1-201ENST00000607711 1078 ntBASIC20.27■□□□□ 0.84
ZIC3O60481 AC106739.1-201ENST00000617035 715 ntBASIC20.27■□□□□ 0.84
ZIC3O60481 AC079630.1-202ENST00000618127 1840 ntBASIC20.27■□□□□ 0.84
ZIC3O60481 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZIC3O60481 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
ZIC3O60481 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZIC3O60481 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZIC3O60481 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZIC3O60481 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
ZIC3O60481 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZIC3O60481 MIR3181-201ENST00000578512 73 ntBASIC20.26■□□□□ 0.83
ZIC3O60481 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.26■□□□□ 0.83
ZIC3O60481 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.26■□□□□ 0.83
ZIC3O60481 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZIC3O60481 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.26■□□□□ 0.83
ZIC3O60481 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZIC3O60481 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms