RNA–Protein interactions for RNA: ENST00000309877.11

IRF3-201, Transcript of interferon regulatory factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene IRF3, Length 1,691 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-201ENST00000309877 NISCHQ9Y2I1 1504 aa51.52■■■■■ 5.84
IRF3-201ENST00000309877 CCDC180Q9P1Z9 1646 aa45.02■■■■■ 4.8
IRF3-201ENST00000309877 ZCCHC6Q5VYS8 1495 aaKnown RBP43.21■■■■■ 4.51
IRF3-201ENST00000309877 ABCC9O60706 1549 aa42.87■■■■■ 4.45
IRF3-201ENST00000309877 DCAF8L2P0C7V8 631 aa42.76■■■■■ 4.44
IRF3-201ENST00000309877 DCAF1Q9Y4B6 1507 aa42.59■■■■■ 4.41
IRF3-201ENST00000309877 MYO15BQ96JP2 1530 aa42.19■■■■■ 4.35
IRF3-201ENST00000309877 NACADO15069 1562 aa42.04■■■■■ 4.32
IRF3-201ENST00000309877 SHROOM4Q9ULL8 1493 aa41.87■■■■■ 4.29
IRF3-201ENST00000309877 RB1CC1Q8TDY2 1594 aa41.75■■■■■ 4.27
IRF3-201ENST00000309877 SCRIBQ14160 1630 aa41.39■■■■■ 4.22
IRF3-201ENST00000309877 UNC13AQ9UPW8 1703 aa40.77■■■■■ 4.12
IRF3-201ENST00000309877 BICRAQ9NZM4 1560 aa40.42■■■■■ 4.06
IRF3-201ENST00000309877 PABPN1Q86U42 306 aaKnown RBP eCLIP40.41■■■■■ 4.062e-7■■■■□ 22.6
IRF3-201ENST00000309877 SUPT5HO00267 1087 aaKnown RBP40.2■■■■■ 4.03
IRF3-201ENST00000309877 CECR2Q9BXF3 1484 aa40.04■■■■■ 4
IRF3-201ENST00000309877 RSF1Q96T23 1441 aaPredicted RBP39.87■■■■□ 3.97
IRF3-201ENST00000309877 BAZ1AQ9NRL2 1556 aaPredicted RBP39.82■■■■□ 3.96
IRF3-201ENST00000309877 MROH2BQ7Z745 1585 aa39.78■■■■□ 3.96
IRF3-201ENST00000309877 SMARCA4P51532 1647 aa39.65■■■■□ 3.94
IRF3-201ENST00000309877 WIZO95785 1651 aa39.42■■■■□ 3.9
IRF3-201ENST00000309877 EIF4G1Q04637 1599 aaKnown RBP39.27■■■■□ 3.88
IRF3-201ENST00000309877 PEG3Q9GZU2 1588 aa39.15■■■■□ 3.86
IRF3-201ENST00000309877 ATAD2BQ9ULI0 1458 aa39.09■■■■□ 3.85
IRF3-201ENST00000309877 SMARCA2P51531 1590 aa39.08■■■■□ 3.85
IRF3-201ENST00000309877 TOP2AP11388 1531 aaKnown RBP39.04■■■■□ 3.84
IRF3-201ENST00000309877 BAZ1BQ9UIG0 1483 aaKnown RBP38.88■■■■□ 3.81
IRF3-201ENST00000309877 NCAPD3P42695 1498 aa38.8■■■■□ 3.8
IRF3-201ENST00000309877 CC2D2AQ9P2K1 1620 aa38.76■■■■□ 3.79
IRF3-201ENST00000309877 HMGXB3Q12766 1538 aa38.71■■■■□ 3.79
IRF3-201ENST00000309877 CCDC88BA6NC98 1476 aa38.65■■■■□ 3.78
IRF3-201ENST00000309877 CHIC1Q5VXU3 224 aa38.3■■■■□ 3.72
IRF3-201ENST00000309877 DNAJC5BQ9UF47 199 aa38.03■■■■□ 3.68
IRF3-201ENST00000309877 CFTRP13569 1480 aa37.86■■■■□ 3.65
IRF3-201ENST00000309877 TRIM41Q8WV44 630 aa37.84■■■■□ 3.65
IRF3-201ENST00000309877 CADPSQ9ULU8 1353 aa37.82■■■■□ 3.64
IRF3-201ENST00000309877 ABCC8Q09428 1581 aa37.72■■■■□ 3.63
IRF3-201ENST00000309877 PRDM2Q13029 1718 aa37.57■■■■□ 3.61
IRF3-201ENST00000309877 WRNQ14191 1432 aaPredicted RBP eCLIP37.56■■■■□ 3.6
IRF3-201ENST00000309877 LAMC3Q9Y6N6 1575 aa37.52■■■■□ 3.6
IRF3-201ENST00000309877 NESP48681 1621 aa37.52■■■■□ 3.6
IRF3-201ENST00000309877 FANCD2Q9BXW9 1451 aa37.39■■■■□ 3.58
IRF3-201ENST00000309877 SYNJ1O43426 1573 aa37.35■■■■□ 3.57
IRF3-201ENST00000309877 PDS5BQ9NTI5 1447 aa37.3■■■■□ 3.56
IRF3-201ENST00000309877 TOP2BQ02880 1626 aa37.24■■■■□ 3.55
IRF3-201ENST00000309877 CUX1P39880 1505 aa37.21■■■■□ 3.55
IRF3-201ENST00000309877 BIVM-ERCC5R4GMW8 1640 aa37.19■■■■□ 3.54
IRF3-201ENST00000309877 CEP164Q9UPV0 1460 aa37.19■■■■□ 3.54
IRF3-201ENST00000309877 FAM9AQ8IZU1 332 aaPredicted RBP37.12■■■■□ 3.53
IRF3-201ENST00000309877 KIF21AQ7Z4S6 1674 aa37.03■■■■□ 3.52
IRF3-201ENST00000309877 SOGA1O94964 1423 aa36.98■■■■□ 3.51
IRF3-201ENST00000309877 DNMBPQ6XZF7 1577 aa36.98■■■■□ 3.51
IRF3-201ENST00000309877 TOPBP1Q92547 1522 aa36.94■■■■□ 3.5
IRF3-201ENST00000309877 URB2Q14146 1524 aaKnown RBP36.91■■■■□ 3.5
IRF3-201ENST00000309877 EEA1Q15075 1411 aa36.9■■■■□ 3.5
IRF3-201ENST00000309877 FGD5Q6ZNL6 1462 aa36.87■■■■□ 3.49
IRF3-201ENST00000309877 ERCC6Q03468 1493 aa36.84■■■■□ 3.49
IRF3-201ENST00000309877 RUSC2Q8N2Y8 1516 aa36.83■■■■□ 3.49
IRF3-201ENST00000309877 LOC105371045A0A1W2PR82 267 aa36.83■■■■□ 3.49
IRF3-201ENST00000309877 MRC2Q9UBG0 1479 aa36.8■■■■□ 3.48
IRF3-201ENST00000309877 CSRNP3Q8WYN3 585 aa36.74■■■■□ 3.47
IRF3-201ENST00000309877 POLA1P09884 1462 aaPredicted RBP36.74■■■■□ 3.47
IRF3-201ENST00000309877 KIF27Q86VH2 1401 aa36.66■■■■□ 3.46
IRF3-201ENST00000309877 RAD54L2Q9Y4B4 1467 aa36.62■■■■□ 3.45
IRF3-201ENST00000309877 CUX2O14529 1486 aa36.61■■■■□ 3.45
IRF3-201ENST00000309877 EHMT2Q96KQ7 1210 aa36.61■■■■□ 3.45
IRF3-201ENST00000309877 WDR62O43379 1518 aa36.58■■■■□ 3.45
IRF3-201ENST00000309877 ABCA10Q8WWZ4 1543 aa36.54■■■■□ 3.44
IRF3-201ENST00000309877 THOC2Q8NI27 1593 aaKnown RBP36.5■■■■□ 3.43
IRF3-201ENST00000309877 WDR97A6NE52 1622 aa36.37■■■■□ 3.41
IRF3-201ENST00000309877 KIF21BO75037 1637 aa36.37■■■■□ 3.41
IRF3-201ENST00000309877 GOLGA3Q08378 1498 aa36.37■■■■□ 3.41
IRF3-201ENST00000309877 TARBP1Q13395 1621 aaKnown RBP36.37■■■■□ 3.41
IRF3-201ENST00000309877 IGF1RP08069 1367 aa36.34■■■■□ 3.41
IRF3-201ENST00000309877 IFT140Q96RY7 1462 aa36.33■■■■□ 3.41
IRF3-201ENST00000309877 TDRD9Q8NDG6 1382 aaKnown RBP36.32■■■■□ 3.4
IRF3-201ENST00000309877 PRXQ9BXM0 1461 aa36.29■■■■□ 3.4
IRF3-201ENST00000309877 UBTFP17480 764 aaKnown RBP36.29■■■■□ 3.4
IRF3-201ENST00000309877 RAPGEF2Q9Y4G8 1499 aa36.24■■■■□ 3.39
IRF3-201ENST00000309877 GAPVD1Q14C86 1478 aa36.24■■■■□ 3.39
IRF3-201ENST00000309877 ABCA5Q8WWZ7 1642 aa36.23■■■■□ 3.39
IRF3-201ENST00000309877 TNIKQ9UKE5 1360 aa36.21■■■■□ 3.39
IRF3-201ENST00000309877 ERICH3Q5RHP9 1530 aa36.2■■■■□ 3.39
IRF3-201ENST00000309877 CARMIL1Q5VZK9 1371 aa36.18■■■■□ 3.38
IRF3-201ENST00000309877 AQRO60306 1485 aaKnown RBP eCLIP36.12■■■■□ 3.372e-7■■■■■ 27.5
IRF3-201ENST00000309877 ZNF608Q9ULD9 1512 aaPredicted RBP36.09■■■■□ 3.37
IRF3-201ENST00000309877 CUL7Q14999 1698 aa36.05■■■■□ 3.36
IRF3-201ENST00000309877 GRIN2BQ13224 1484 aa36■■■■□ 3.35
IRF3-201ENST00000309877 PBRM1Q86U86 1689 aa35.98■■■■□ 3.35
IRF3-201ENST00000309877 CEP162Q5TB80 1403 aa35.97■■■■□ 3.35
IRF3-201ENST00000309877 EIF4G3O43432 1585 aaKnown RBP35.94■■■■□ 3.34
IRF3-201ENST00000309877 FHAD1B1AJZ9 1412 aa35.85■■■■□ 3.33
IRF3-201ENST00000309877 ADAMTS12P58397 1594 aa35.79■■■■□ 3.32
IRF3-201ENST00000309877 CLIP1P30622 1438 aa35.78■■■■□ 3.32
IRF3-201ENST00000309877 RANGAP1P46060 587 aaPredicted RBP35.78■■■■□ 3.32
IRF3-201ENST00000309877 SNAPC4Q5SXM2 1469 aa35.77■■■■□ 3.32
IRF3-201ENST00000309877 MAGI1Q96QZ7 1491 aaPredicted RBP35.71■■■■□ 3.31
IRF3-201ENST00000309877 CHMP7Q8WUX9 453 aaPredicted RBP35.58■■■■□ 3.29
IRF3-201ENST00000309877 SYNJ2O15056 1496 aa35.58■■■■□ 3.29
IRF3-201ENST00000309877 CTTNBP2Q8WZ74 1663 aa35.58■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms