Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SSU72-203ENST00000378725 619 ntTSL 223.69■■□□□ 1.384e-8■□□□□ 8.4
YBX3P16989 SKA2-209ENST00000583976 570 ntTSL 221.62■■□□□ 1.054e-8■□□□□ 8.4
YBX3P16989 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18.26■□□□□ 0.514e-8■□□□□ 8.4
YBX3P16989 SKA2-205ENST00000580541 689 ntTSL 3 BASIC17.47■□□□□ 0.394e-8■□□□□ 8.4
YBX3P16989 CNOT1-210ENST00000567133 553 ntTSL 514.49□□□□□ -0.094e-8■□□□□ 8.4
YBX3P16989 SKA2-208ENST00000583927 533 ntTSL 213.04□□□□□ -0.324e-8■□□□□ 8.4
YBX3P16989 SKA2-206ENST00000581068 595 ntTSL 2 BASIC13.01□□□□□ -0.334e-8■□□□□ 8.4
YBX3P16989 WNK1-212ENST00000540885 874 ntTSL 1 (best)12.87□□□□□ -0.354e-8■□□□□ 8.4
YBX3P16989 ACSL3-204ENST00000413316 650 ntTSL 412.41□□□□□ -0.424e-8■□□□□ 8.4
YBX3P16989 SKA2-204ENST00000578519 894 ntTSL 312.21□□□□□ -0.454e-8■□□□□ 8.4
YBX3P16989 MTHFD1-203ENST00000553391 568 ntTSL 410.38□□□□□ -0.754e-8■□□□□ 8.4
YBX3P16989 SEL1L-201ENST00000336735 7925 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.824e-8■□□□□ 8.4
YBX3P16989 SKA2-207ENST00000583380 583 ntTSL 5 BASIC9.71□□□□□ -0.864e-8■□□□□ 8.4
YBX3P16989 ARID2-201ENST00000334344 8642 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.914e-8■□□□□ 8.4
YBX3P16989 SKA2-203ENST00000578105 689 ntTSL 2 BASIC8.7□□□□□ -1.024e-8■□□□□ 8.4
YBX3P16989 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.024e-8■□□□□ 8.4
YBX3P16989 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.47□□□□□ -1.694e-8■□□□□ 8.4
YBX3P16989 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.11□□□□□ -1.754e-8■□□□□ 8.4
YBX3P16989 ARID2-208ENST00000479608 7761 ntTSL 1 (best)3.94□□□□□ -1.784e-8■□□□□ 8.4
YBX3P16989 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC34.37■■■■□ 3.094e-7■□□□□ 8.4
YBX3P16989 PTPRF-207ENST00000436724 2168 ntTSL 1 (best)24.01■■□□□ 1.434e-7■□□□□ 8.4
YBX3P16989 PTPRF-214ENST00000496043 415 ntTSL 517.07■□□□□ 0.324e-7■□□□□ 8.4
YBX3P16989 PTPRF-213ENST00000481019 459 ntTSL 315.89■□□□□ 0.134e-7■□□□□ 8.4
YBX3P16989 PTPRF-202ENST00000372405 1962 ntTSL 1 (best)15.73■□□□□ 0.114e-7■□□□□ 8.4
YBX3P16989 DCTN2-208ENST00000547480 599 ntTSL 220.45■□□□□ 0.867e-8■□□□□ 8.4
YBX3P16989 DCTN2-217ENST00000550750 567 ntTSL 220.45■□□□□ 0.867e-8■□□□□ 8.4
YBX3P16989 DCTN2-207ENST00000547345 566 ntTSL 28.32□□□□□ -1.087e-8■□□□□ 8.4
YBX3P16989 DCTN2-203ENST00000546559 471 ntTSL 37.86□□□□□ -1.157e-8■□□□□ 8.4
YBX3P16989 DCTN2-213ENST00000549712 211 ntTSL 53.36□□□□□ -1.877e-8■□□□□ 8.4
YBX3P16989 LYPLA1-208ENST00000520718 577 ntTSL 1 (best)6.95□□□□□ -1.35e-16■□□□□ 8.4
YBX3P16989 CUL4A-205ENST00000463426 893 ntTSL 332.57■■■□□ 2.81e-8■□□□□ 8.4
YBX3P16989 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.91■■■□□ 2.541e-8■□□□□ 8.4
YBX3P16989 B2M-213ENST00000623550 2329 nt7.27□□□□□ -1.251e-6■□□□□ 8.4
YBX3P16989 MED24-225ENST00000580885 1963 ntTSL 519.15■□□□□ 0.662e-6■□□□□ 8.3
YBX3P16989 MED24-219ENST00000578901 728 ntTSL 1 (best)11.6□□□□□ -0.552e-6■□□□□ 8.3
YBX3P16989 ASAH1-209ENST00000520051 667 ntTSL 523.17■■□□□ 1.37e-8■□□□□ 8.3
YBX3P16989 PAM16-205ENST00000571986 606 ntTSL 323.05■■□□□ 1.281e-6■□□□□ 8.3
YBX3P16989 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.951e-6■□□□□ 8.3
YBX3P16989 PAM16-209ENST00000573614 650 ntTSL 520.28■□□□□ 0.841e-6■□□□□ 8.3
YBX3P16989 PAM16-202ENST00000571178 353 ntTSL 319.78■□□□□ 0.761e-6■□□□□ 8.3
YBX3P16989 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.61e-6■□□□□ 8.3
YBX3P16989 CORO7-PAM16-203ENST00000575334 3815 ntTSL 217.91■□□□□ 0.461e-6■□□□□ 8.3
YBX3P16989 CORO7-PAM16-202ENST00000572467 3284 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31e-6■□□□□ 8.3
YBX3P16989 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC22.69■■□□□ 1.228e-11■□□□□ 8.3
YBX3P16989 PDCD6-203ENST00000505526 1484 ntTSL 1 (best)21.62■■□□□ 1.058e-11■□□□□ 8.3
YBX3P16989 PDCD6-211ENST00000515587 855 ntTSL 1 (best)19.53■□□□□ 0.728e-11■□□□□ 8.3
YBX3P16989 PDLIM5-213ENST00000509357 554 ntTSL 511.49□□□□□ -0.576e-8■□□□□ 8.3
YBX3P16989 PDLIM5-211ENST00000508531 480 ntTSL 47.31□□□□□ -1.246e-8■□□□□ 8.3
YBX3P16989 PDLIM5-218ENST00000513341 794 ntTSL 36.95□□□□□ -1.36e-8■□□□□ 8.3
YBX3P16989 PDLIM5-214ENST00000510099 554 ntTSL 45.17□□□□□ -1.586e-8■□□□□ 8.3
YBX3P16989 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC29.69■■■□□ 2.342e-8■□□□□ 8.3
YBX3P16989 FBXO7-204ENST00000425028 1921 ntTSL 523.47■■□□□ 1.352e-8■□□□□ 8.3
YBX3P16989 FBXO7-203ENST00000420700 1900 ntTSL 519.74■□□□□ 0.752e-8■□□□□ 8.3
YBX3P16989 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.492e-8■□□□□ 8.3
YBX3P16989 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC8.9□□□□□ -0.982e-8■□□□□ 8.3
YBX3P16989 FBXO7-209ENST00000492535 6884 ntTSL 58.02□□□□□ -1.132e-8■□□□□ 8.3
YBX3P16989 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.935e-7■□□□□ 8.3
YBX3P16989 FOXN3-217ENST00000557572 513 ntTSL 38.61□□□□□ -1.035e-7■□□□□ 8.3
YBX3P16989 MKRN1-212ENST00000481705 636 ntTSL 535.06■■■■□ 3.24e-6■□□□□ 8.3
YBX3P16989 PPP4C-211ENST00000567642 658 ntTSL 228.23■■■□□ 2.113e-9■□□□□ 8.3
YBX3P16989 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.484e-6■□□□□ 8.3
YBX3P16989 COMMD7-203ENST00000474815 488 ntTSL 523.24■■□□□ 1.314e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-212ENST00000600231 2534 ntTSL 223.18■■□□□ 1.34e-6■□□□□ 8.3
YBX3P16989 PSTPIP2-203ENST00000588801 1023 ntTSL 523.08■■□□□ 1.294e-6■□□□□ 8.3
YBX3P16989 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.274e-6■□□□□ 8.3
YBX3P16989 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.24e-6■□□□□ 8.3
YBX3P16989 BRD9-201ENST00000466684 1417 ntTSL 222.54■■□□□ 1.24e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.194e-6■□□□□ 8.3
YBX3P16989 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC22.26■■□□□ 1.154e-6■□□□□ 8.3
YBX3P16989 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC22.13■■□□□ 1.134e-6■□□□□ 8.3
YBX3P16989 GLB1-210ENST00000461475 816 ntTSL 321.99■■□□□ 1.114e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-213ENST00000603669 552 ntTSL 521.48■■□□□ 1.034e-6■□□□□ 8.3
YBX3P16989 GLB1-218ENST00000497796 899 ntTSL 321.2■□□□□ 0.984e-6■□□□□ 8.3
YBX3P16989 C8orf76-205ENST00000521310 948 ntTSL 321.02■□□□□ 0.964e-6■□□□□ 8.3
YBX3P16989 PEF1-206ENST00000489164 865 ntTSL 520.92■□□□□ 0.944e-6■□□□□ 8.3
YBX3P16989 BRD9-205ENST00000483234 2211 ntTSL 219.87■□□□□ 0.774e-6■□□□□ 8.3
YBX3P16989 CUL4B-205ENST00000467641 836 ntTSL 319.76■□□□□ 0.754e-6■□□□□ 8.3
YBX3P16989 C8orf76-204ENST00000519791 569 ntTSL 219.64■□□□□ 0.734e-6■□□□□ 8.3
YBX3P16989 WDR18-205ENST00000590354 678 ntTSL 219.59■□□□□ 0.734e-6■□□□□ 8.3
YBX3P16989 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.654e-6■□□□□ 8.3
YBX3P16989 BRD9-217ENST00000519112 861 ntTSL 318.77■□□□□ 0.64e-6■□□□□ 8.3
YBX3P16989 BRD9-218ENST00000519838 396 ntTSL 218.77■□□□□ 0.64e-6■□□□□ 8.3
YBX3P16989 PSTPIP2-202ENST00000587042 859 ntTSL 218.36■□□□□ 0.534e-6■□□□□ 8.3
YBX3P16989 GRSF1-202ENST00000499044 2491 ntTSL 218.2■□□□□ 0.54e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC17.98■□□□□ 0.474e-6■□□□□ 8.3
YBX3P16989 BRD9-212ENST00000495265 2843 ntTSL 217.91■□□□□ 0.464e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.334e-6■□□□□ 8.3
YBX3P16989 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.93■□□□□ 0.34e-6■□□□□ 8.3
YBX3P16989 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.294e-6■□□□□ 8.3
YBX3P16989 BRD9-210ENST00000493082 750 ntTSL 516.48■□□□□ 0.234e-6■□□□□ 8.3
YBX3P16989 BRD9-208ENST00000489816 3170 ntTSL 1 (best)16.22■□□□□ 0.194e-6■□□□□ 8.3
YBX3P16989 AC015688.5-201ENST00000584605 603 ntAPPRIS P5 TSL 2 BASIC16.06■□□□□ 0.164e-6■□□□□ 8.3
YBX3P16989 PEF1-202ENST00000461006 732 ntTSL 515.76■□□□□ 0.114e-6■□□□□ 8.3
YBX3P16989 MRPL54-202ENST00000589174 491 ntTSL 315.41■□□□□ 0.064e-6■□□□□ 8.3
YBX3P16989 PEF1-205ENST00000478502 750 ntTSL 215.31■□□□□ 0.044e-6■□□□□ 8.3
YBX3P16989 SGTA-205ENST00000591984 882 ntTSL 215.29■□□□□ 0.044e-6■□□□□ 8.3
YBX3P16989 BRD9-203ENST00000475706 744 ntTSL 1 (best)15.09■□□□□ 0.014e-6■□□□□ 8.3
YBX3P16989 BRD9-204ENST00000483173 2120 ntTSL 2 BASIC14.72□□□□□ -0.054e-6■□□□□ 8.3
YBX3P16989 GRSF1-207ENST00000514161 1765 ntTSL 214.63□□□□□ -0.074e-6■□□□□ 8.3
YBX3P16989 ATP6V1A-205ENST00000475322 754 ntTSL 314.3□□□□□ -0.124e-6■□□□□ 8.3
Retrieved 100 of 29,075 protein–RNA pairs in 582.8 ms