RNA–Protein interactions for RNA: ENST00000580541.1

SKA2-205, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-205ENST00000580541 NISCHQ9Y2I1 1504 aa33.48■■■□□ 2.95
SKA2-205ENST00000580541 CCDC180Q9P1Z9 1646 aa29.54■■■□□ 2.32
SKA2-205ENST00000580541 ABCC9O60706 1549 aa28.44■■■□□ 2.14
SKA2-205ENST00000580541 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.06
SKA2-205ENST00000580541 DCAF8L2P0C7V8 631 aa27.94■■■□□ 2.06
SKA2-205ENST00000580541 DCAF1Q9Y4B6 1507 aa27.76■■■□□ 2.03
SKA2-205ENST00000580541 NACADO15069 1562 aa27.73■■■□□ 2.03
SKA2-205ENST00000580541 MYO15BQ96JP2 1530 aa27.72■■■□□ 2.03
SKA2-205ENST00000580541 RB1CC1Q8TDY2 1594 aa27.63■■■□□ 2.01
SKA2-205ENST00000580541 SCRIBQ14160 1630 aa26.95■■□□□ 1.91
SKA2-205ENST00000580541 UNC13AQ9UPW8 1703 aa26.87■■□□□ 1.89
SKA2-205ENST00000580541 SHROOM4Q9ULL8 1493 aa26.73■■□□□ 1.87
SKA2-205ENST00000580541 PABPN1Q86U42 306 aaKnown RBP eCLIP26.7■■□□□ 1.86
SKA2-205ENST00000580541 BICRAQ9NZM4 1560 aa26.64■■□□□ 1.86
SKA2-205ENST00000580541 AEBP2Q6ZN18 517 aaPredicted RBP26.13■■□□□ 1.77
SKA2-205ENST00000580541 CECR2Q9BXF3 1484 aa25.97■■□□□ 1.75
SKA2-205ENST00000580541 EIF4G1Q04637 1599 aaKnown RBP25.96■■□□□ 1.75
SKA2-205ENST00000580541 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.75
SKA2-205ENST00000580541 SMARCA4P51532 1647 aa25.85■■□□□ 1.73
SKA2-205ENST00000580541 MROH2BQ7Z745 1585 aa25.76■■□□□ 1.71
SKA2-205ENST00000580541 CC2D2AQ9P2K1 1620 aa25.74■■□□□ 1.71
SKA2-205ENST00000580541 RSF1Q96T23 1441 aaPredicted RBP25.69■■□□□ 1.7
SKA2-205ENST00000580541 SMARCA2P51531 1590 aa25.66■■□□□ 1.7
SKA2-205ENST00000580541 DNAJC5BQ9UF47 199 aa25.64■■□□□ 1.7
SKA2-205ENST00000580541 ATAD2BQ9ULI0 1458 aa25.62■■□□□ 1.69
SKA2-205ENST00000580541 PEG3Q9GZU2 1588 aa25.61■■□□□ 1.69
SKA2-205ENST00000580541 NCAPD3P42695 1498 aa25.57■■□□□ 1.68
SKA2-205ENST00000580541 SUPT5HO00267 1087 aaKnown RBP25.5■■□□□ 1.67
SKA2-205ENST00000580541 WIZO95785 1651 aa25.5■■□□□ 1.67
SKA2-205ENST00000580541 BAZ1BQ9UIG0 1483 aaKnown RBP25.47■■□□□ 1.67
SKA2-205ENST00000580541 HMGXB3Q12766 1538 aa25.45■■□□□ 1.66
SKA2-205ENST00000580541 TOP2AP11388 1531 aaKnown RBP25.3■■□□□ 1.64
SKA2-205ENST00000580541 CHIC1Q5VXU3 224 aa25.21■■□□□ 1.63
SKA2-205ENST00000580541 CCDC88BA6NC98 1476 aa25.02■■□□□ 1.6
SKA2-205ENST00000580541 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
SKA2-205ENST00000580541 LAMC3Q9Y6N6 1575 aa24.81■■□□□ 1.56
SKA2-205ENST00000580541 CFTRP13569 1480 aa24.78■■□□□ 1.56
SKA2-205ENST00000580541 PDS5BQ9NTI5 1447 aa24.71■■□□□ 1.55
SKA2-205ENST00000580541 NESP48681 1621 aa24.7■■□□□ 1.54
SKA2-205ENST00000580541 PRDM2Q13029 1718 aa24.6■■□□□ 1.53
SKA2-205ENST00000580541 ERCC6Q03468 1493 aa24.57■■□□□ 1.52
SKA2-205ENST00000580541 FANCD2Q9BXW9 1451 aa24.55■■□□□ 1.52
SKA2-205ENST00000580541 CEP164Q9UPV0 1460 aa24.49■■□□□ 1.51
SKA2-205ENST00000580541 KIF21AQ7Z4S6 1674 aa24.42■■□□□ 1.5
SKA2-205ENST00000580541 ABCC8Q09428 1581 aa24.35■■□□□ 1.49
SKA2-205ENST00000580541 MRC2Q9UBG0 1479 aa24.33■■□□□ 1.49
SKA2-205ENST00000580541 WRNQ14191 1432 aaPredicted RBP eCLIP24.26■■□□□ 1.47
SKA2-205ENST00000580541 DNMBPQ6XZF7 1577 aa24.2■■□□□ 1.47
SKA2-205ENST00000580541 THOC2Q8NI27 1593 aaKnown RBP24.2■■□□□ 1.47
SKA2-205ENST00000580541 URB2Q14146 1524 aaKnown RBP24.2■■□□□ 1.47
SKA2-205ENST00000580541 WDR62O43379 1518 aa24.2■■□□□ 1.46
SKA2-205ENST00000580541 TOPBP1Q92547 1522 aa24.19■■□□□ 1.46
SKA2-205ENST00000580541 CUX1P39880 1505 aa24.14■■□□□ 1.45
SKA2-205ENST00000580541 TRIM41Q8WV44 630 aa24.13■■□□□ 1.45
SKA2-205ENST00000580541 CUX2O14529 1486 aa24.11■■□□□ 1.45
SKA2-205ENST00000580541 TOP2BQ02880 1626 aa24.1■■□□□ 1.45
SKA2-205ENST00000580541 BIVM-ERCC5R4GMW8 1640 aa24.06■■□□□ 1.44
SKA2-205ENST00000580541 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
SKA2-205ENST00000580541 FGD5Q6ZNL6 1462 aa24.01■■□□□ 1.43
SKA2-205ENST00000580541 SOGA1O94964 1423 aa24.01■■□□□ 1.43
SKA2-205ENST00000580541 POLA1P09884 1462 aaPredicted RBP24■■□□□ 1.43
SKA2-205ENST00000580541 IFT140Q96RY7 1462 aa23.97■■□□□ 1.43
SKA2-205ENST00000580541 RAD54L2Q9Y4B4 1467 aa23.88■■□□□ 1.41
SKA2-205ENST00000580541 TARBP1Q13395 1621 aaKnown RBP23.84■■□□□ 1.41
SKA2-205ENST00000580541 ABCA10Q8WWZ4 1543 aa23.84■■□□□ 1.41
SKA2-205ENST00000580541 WDR97A6NE52 1622 aa23.78■■□□□ 1.4
SKA2-205ENST00000580541 TDRD9Q8NDG6 1382 aaKnown RBP23.77■■□□□ 1.4
SKA2-205ENST00000580541 KIF27Q86VH2 1401 aa23.76■■□□□ 1.39
SKA2-205ENST00000580541 ZNF608Q9ULD9 1512 aaPredicted RBP23.72■■□□□ 1.39
SKA2-205ENST00000580541 GAPVD1Q14C86 1478 aa23.71■■□□□ 1.39
SKA2-205ENST00000580541 AQRO60306 1485 aaKnown RBP eCLIP23.7■■□□□ 1.38
SKA2-205ENST00000580541 EEA1Q15075 1411 aa23.66■■□□□ 1.38
SKA2-205ENST00000580541 GRIN2BQ13224 1484 aa23.64■■□□□ 1.38
SKA2-205ENST00000580541 EIF4G3O43432 1585 aaKnown RBP23.64■■□□□ 1.37
SKA2-205ENST00000580541 ABCA5Q8WWZ7 1642 aa23.62■■□□□ 1.37
SKA2-205ENST00000580541 ERICH3Q5RHP9 1530 aa23.59■■□□□ 1.37
SKA2-205ENST00000580541 CSRNP3Q8WYN3 585 aa23.57■■□□□ 1.36
SKA2-205ENST00000580541 IGF1RP08069 1367 aa23.56■■□□□ 1.36
SKA2-205ENST00000580541 PBRM1Q86U86 1689 aa23.54■■□□□ 1.36
SKA2-205ENST00000580541 RUSC2Q8N2Y8 1516 aa23.54■■□□□ 1.36
SKA2-205ENST00000580541 FAM9AQ8IZU1 332 aaPredicted RBP23.53■■□□□ 1.36
SKA2-205ENST00000580541 MAGI1Q96QZ7 1491 aaPredicted RBP23.53■■□□□ 1.36
SKA2-205ENST00000580541 CHMP7Q8WUX9 453 aaPredicted RBP23.48■■□□□ 1.35
SKA2-205ENST00000580541 SNAPC4Q5SXM2 1469 aa23.48■■□□□ 1.35
SKA2-205ENST00000580541 CARMIL1Q5VZK9 1371 aa23.47■■□□□ 1.35
SKA2-205ENST00000580541 FHAD1B1AJZ9 1412 aa23.47■■□□□ 1.35
SKA2-205ENST00000580541 CUL7Q14999 1698 aa23.45■■□□□ 1.34
SKA2-205ENST00000580541 FBLN2P98095 1184 aa23.45■■□□□ 1.34
SKA2-205ENST00000580541 SYNJ2O15056 1496 aa23.42■■□□□ 1.34
SKA2-205ENST00000580541 ADAMTS12P58397 1594 aa23.37■■□□□ 1.33
SKA2-205ENST00000580541 RAPGEF2Q9Y4G8 1499 aa23.36■■□□□ 1.33
SKA2-205ENST00000580541 PRXQ9BXM0 1461 aa23.35■■□□□ 1.33
SKA2-205ENST00000580541 OSCARQ8IYS5 282 aa23.31■■□□□ 1.32
SKA2-205ENST00000580541 GRIN2AQ12879 1464 aa23.3■■□□□ 1.32
SKA2-205ENST00000580541 KIF21BO75037 1637 aa23.26■■□□□ 1.31
SKA2-205ENST00000580541 CHD1O14646 1710 aa23.25■■□□□ 1.31
SKA2-205ENST00000580541 UBTFP17480 764 aaKnown RBP23.22■■□□□ 1.31
SKA2-205ENST00000580541 GOLGA3Q08378 1498 aa23.21■■□□□ 1.31
SKA2-205ENST00000580541 NUP160Q12769 1436 aa23.16■■□□□ 1.3
SKA2-205ENST00000580541 EHMT2Q96KQ7 1210 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms