RNA–Protein interactions for RNA: ENST00000583976.1

SKA2-209, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-209ENST00000583976 NISCHQ9Y2I1 1504 aa39.5■■■■□ 3.91
SKA2-209ENST00000583976 ABCC9O60706 1549 aa35.56■■■■□ 3.28
SKA2-209ENST00000583976 CCDC180Q9P1Z9 1646 aa35.52■■■■□ 3.28
SKA2-209ENST00000583976 RB1CC1Q8TDY2 1594 aa33.77■■■■□ 3
SKA2-209ENST00000583976 NACADO15069 1562 aa33.51■■■□□ 2.95
SKA2-209ENST00000583976 DNAJC5BQ9UF47 199 aa33.31■■■□□ 2.92
SKA2-209ENST00000583976 DCAF8L2P0C7V8 631 aa33.22■■■□□ 2.91
SKA2-209ENST00000583976 UNC13AQ9UPW8 1703 aa33.16■■■□□ 2.9
SKA2-209ENST00000583976 PABPN1Q86U42 306 aaKnown RBP eCLIP33.02■■■□□ 2.88
SKA2-209ENST00000583976 MYO15BQ96JP2 1530 aa32.99■■■□□ 2.87
SKA2-209ENST00000583976 BICRAQ9NZM4 1560 aa32.88■■■□□ 2.85
SKA2-209ENST00000583976 ZCCHC6Q5VYS8 1495 aaKnown RBP32.8■■■□□ 2.84
SKA2-209ENST00000583976 DCAF1Q9Y4B6 1507 aa32.59■■■□□ 2.81
SKA2-209ENST00000583976 SCRIBQ14160 1630 aa32.44■■■□□ 2.78
SKA2-209ENST00000583976 SHROOM4Q9ULL8 1493 aa32.31■■■□□ 2.76
SKA2-209ENST00000583976 CC2D2AQ9P2K1 1620 aa32.13■■■□□ 2.73
SKA2-209ENST00000583976 EIF4G1Q04637 1599 aaKnown RBP32.05■■■□□ 2.72
SKA2-209ENST00000583976 CECR2Q9BXF3 1484 aa31.99■■■□□ 2.71
SKA2-209ENST00000583976 NCAPD3P42695 1498 aa30.9■■■□□ 2.54
SKA2-209ENST00000583976 SMARCA4P51532 1647 aa30.89■■■□□ 2.54
SKA2-209ENST00000583976 ATAD2BQ9ULI0 1458 aa30.87■■■□□ 2.53
SKA2-209ENST00000583976 HMGXB3Q12766 1538 aa30.76■■■□□ 2.51
SKA2-209ENST00000583976 SMARCA2P51531 1590 aa30.75■■■□□ 2.51
SKA2-209ENST00000583976 BAZ1AQ9NRL2 1556 aaPredicted RBP30.66■■■□□ 2.5
SKA2-209ENST00000583976 ERCC6Q03468 1493 aa30.65■■■□□ 2.5
SKA2-209ENST00000583976 CUX2O14529 1486 aa30.58■■■□□ 2.49
SKA2-209ENST00000583976 BAZ1BQ9UIG0 1483 aaKnown RBP30.57■■■□□ 2.48
SKA2-209ENST00000583976 NESP48681 1621 aa30.57■■■□□ 2.48
SKA2-209ENST00000583976 PEG3Q9GZU2 1588 aa30.54■■■□□ 2.48
SKA2-209ENST00000583976 DNAJC5Q9H3Z4 198 aa30.5■■■□□ 2.47
SKA2-209ENST00000583976 MROH2BQ7Z745 1585 aa30.49■■■□□ 2.47
SKA2-209ENST00000583976 THOC2Q8NI27 1593 aaKnown RBP30.32■■■□□ 2.44
SKA2-209ENST00000583976 LAMC3Q9Y6N6 1575 aa30.27■■■□□ 2.44
SKA2-209ENST00000583976 KIF21AQ7Z4S6 1674 aa30.21■■■□□ 2.43
SKA2-209ENST00000583976 WIZO95785 1651 aa30.16■■■□□ 2.42
SKA2-209ENST00000583976 PDS5BQ9NTI5 1447 aa30.01■■■□□ 2.39
SKA2-209ENST00000583976 CADPSQ9ULU8 1353 aa29.95■■■□□ 2.39
SKA2-209ENST00000583976 MRC2Q9UBG0 1479 aa29.86■■■□□ 2.37
SKA2-209ENST00000583976 WDR62O43379 1518 aa29.82■■■□□ 2.36
SKA2-209ENST00000583976 RSF1Q96T23 1441 aaPredicted RBP29.79■■■□□ 2.36
SKA2-209ENST00000583976 TOP2AP11388 1531 aaKnown RBP29.75■■■□□ 2.35
SKA2-209ENST00000583976 CEP164Q9UPV0 1460 aa29.74■■■□□ 2.35
SKA2-209ENST00000583976 FANCD2Q9BXW9 1451 aa29.69■■■□□ 2.34
SKA2-209ENST00000583976 CFTRP13569 1480 aa29.65■■■□□ 2.34
SKA2-209ENST00000583976 URB2Q14146 1524 aaKnown RBP29.5■■■□□ 2.31
SKA2-209ENST00000583976 PRDM2Q13029 1718 aa29.48■■■□□ 2.31
SKA2-209ENST00000583976 CCDC88BA6NC98 1476 aa29.35■■■□□ 2.29
SKA2-209ENST00000583976 TRIM41Q8WV44 630 aa29.24■■■□□ 2.27
SKA2-209ENST00000583976 TOPBP1Q92547 1522 aa29.15■■■□□ 2.26
SKA2-209ENST00000583976 ZNF608Q9ULD9 1512 aaPredicted RBP29.15■■■□□ 2.26
SKA2-209ENST00000583976 IFT140Q96RY7 1462 aa29.1■■■□□ 2.25
SKA2-209ENST00000583976 DNMBPQ6XZF7 1577 aa29.05■■■□□ 2.24
SKA2-209ENST00000583976 EIF4G3O43432 1585 aaKnown RBP29.04■■■□□ 2.24
SKA2-209ENST00000583976 OSCARQ8IYS5 282 aa29.03■■■□□ 2.24
SKA2-209ENST00000583976 ABCC8Q09428 1581 aa28.93■■■□□ 2.22
SKA2-209ENST00000583976 TARBP1Q13395 1621 aaKnown RBP28.92■■■□□ 2.22
SKA2-209ENST00000583976 RIMBP3CA6NJZ7 1639 aa28.91■■■□□ 2.22
SKA2-209ENST00000583976 RIMBP3BA6NNM3 1639 aa28.91■■■□□ 2.22
SKA2-209ENST00000583976 RIMBP3Q9UFD9 1639 aa28.91■■■□□ 2.22
SKA2-209ENST00000583976 POLA1P09884 1462 aaPredicted RBP28.85■■■□□ 2.21
SKA2-209ENST00000583976 CHD1O14646 1710 aa28.83■■■□□ 2.21
SKA2-209ENST00000583976 AQRO60306 1485 aaKnown RBP eCLIP28.81■■■□□ 2.2
SKA2-209ENST00000583976 ARHGEF11O15085 1522 aa28.79■■■□□ 2.2
SKA2-209ENST00000583976 RAD54L2Q9Y4B4 1467 aa28.75■■■□□ 2.19
SKA2-209ENST00000583976 FGD5Q6ZNL6 1462 aa28.67■■■□□ 2.18
SKA2-209ENST00000583976 CUX1P39880 1505 aa28.67■■■□□ 2.18
SKA2-209ENST00000583976 SOGA1O94964 1423 aa28.61■■■□□ 2.17
SKA2-209ENST00000583976 TDRD9Q8NDG6 1382 aaKnown RBP28.61■■■□□ 2.17
SKA2-209ENST00000583976 SNAPC4Q5SXM2 1469 aa28.59■■■□□ 2.17
SKA2-209ENST00000583976 WDR97A6NE52 1622 aa28.56■■■□□ 2.16
SKA2-209ENST00000583976 FBLN2P98095 1184 aa28.54■■■□□ 2.16
SKA2-209ENST00000583976 ARAP1Q96P48 1450 aa28.53■■■□□ 2.16
SKA2-209ENST00000583976 CLASP1Q7Z460 1538 aa28.46■■■□□ 2.15
SKA2-209ENST00000583976 PBRM1Q86U86 1689 aa28.44■■■□□ 2.14
SKA2-209ENST00000583976 MAGI1Q96QZ7 1491 aaPredicted RBP28.43■■■□□ 2.14
SKA2-209ENST00000583976 CYB5RLQ6IPT4 315 aa28.42■■■□□ 2.14
SKA2-209ENST00000583976 GRIN2BQ13224 1484 aa28.41■■■□□ 2.14
SKA2-209ENST00000583976 SYNJ1O43426 1573 aa28.37■■■□□ 2.13
SKA2-209ENST00000583976 SUPT5HO00267 1087 aaKnown RBP28.37■■■□□ 2.13
SKA2-209ENST00000583976 ABCA5Q8WWZ7 1642 aa28.36■■■□□ 2.13
SKA2-209ENST00000583976 SYNJ2O15056 1496 aa28.34■■■□□ 2.13
SKA2-209ENST00000583976 GAPVD1Q14C86 1478 aa28.31■■■□□ 2.12
SKA2-209ENST00000583976 ABCA10Q8WWZ4 1543 aa28.3■■■□□ 2.12
SKA2-209ENST00000583976 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
SKA2-209ENST00000583976 BIVM-ERCC5R4GMW8 1640 aa28.2■■■□□ 2.1
SKA2-209ENST00000583976 ADAMTS12P58397 1594 aa28.17■■■□□ 2.1
SKA2-209ENST00000583976 TOP2BQ02880 1626 aa28.17■■■□□ 2.1
SKA2-209ENST00000583976 WRNQ14191 1432 aaPredicted RBP eCLIP28.11■■■□□ 2.09
SKA2-209ENST00000583976 TRHP20396 242 aaPredicted RBP28.11■■■□□ 2.09
SKA2-209ENST00000583976 GRIN2AQ12879 1464 aa28.09■■■□□ 2.09
SKA2-209ENST00000583976 CEP170Q5SW79 1584 aa28.07■■■□□ 2.08
SKA2-209ENST00000583976 ERCC6L2Q5T890 1561 aa28.07■■■□□ 2.08
SKA2-209ENST00000583976 NUP160Q12769 1436 aa27.99■■■□□ 2.07
SKA2-209ENST00000583976 FHAD1B1AJZ9 1412 aa27.93■■■□□ 2.06
SKA2-209ENST00000583976 ERICH3Q5RHP9 1530 aa27.93■■■□□ 2.06
SKA2-209ENST00000583976 SHROOM2Q13796 1616 aa27.92■■■□□ 2.06
SKA2-209ENST00000583976 RUSC2Q8N2Y8 1516 aa27.78■■■□□ 2.04
SKA2-209ENST00000583976 PRG4Q92954 1404 aaPredicted RBP27.68■■■□□ 2.02
SKA2-209ENST00000583976 KIF13AQ9H1H9 1805 aa27.59■■■□□ 2.01
SKA2-209ENST00000583976 CUL7Q14999 1698 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms