RNA–Protein interactions for RNA: ENST00000583927.1

SKA2-208, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 533 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-208ENST00000583927 NISCHQ9Y2I1 1504 aa24.47■■□□□ 1.51
SKA2-208ENST00000583927 CCDC180Q9P1Z9 1646 aa21.93■■□□□ 1.1
SKA2-208ENST00000583927 ABCC9O60706 1549 aa21.39■■□□□ 1.02
SKA2-208ENST00000583927 RB1CC1Q8TDY2 1594 aa20.64■□□□□ 0.9
SKA2-208ENST00000583927 NACADO15069 1562 aa20.61■□□□□ 0.89
SKA2-208ENST00000583927 MYO15BQ96JP2 1530 aa20.49■□□□□ 0.87
SKA2-208ENST00000583927 ZCCHC6Q5VYS8 1495 aaKnown RBP20.36■□□□□ 0.85
SKA2-208ENST00000583927 DCAF1Q9Y4B6 1507 aa20.33■□□□□ 0.85
SKA2-208ENST00000583927 DCAF8L2P0C7V8 631 aa20.29■□□□□ 0.84
SKA2-208ENST00000583927 UNC13AQ9UPW8 1703 aa20.26■□□□□ 0.83
SKA2-208ENST00000583927 BICRAQ9NZM4 1560 aa20.03■□□□□ 0.8
SKA2-208ENST00000583927 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
SKA2-208ENST00000583927 SHROOM4Q9ULL8 1493 aa19.88■□□□□ 0.77
SKA2-208ENST00000583927 SCRIBQ14160 1630 aa19.84■□□□□ 0.77
SKA2-208ENST00000583927 DNAJC5BQ9UF47 199 aa19.76■□□□□ 0.75
SKA2-208ENST00000583927 EIF4G1Q04637 1599 aaKnown RBP19.49■□□□□ 0.71
SKA2-208ENST00000583927 CC2D2AQ9P2K1 1620 aa19.44■□□□□ 0.7
SKA2-208ENST00000583927 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
SKA2-208ENST00000583927 SMARCA4P51532 1647 aa19.04■□□□□ 0.64
SKA2-208ENST00000583927 BAZ1AQ9NRL2 1556 aaPredicted RBP18.99■□□□□ 0.63
SKA2-208ENST00000583927 NCAPD3P42695 1498 aa18.98■□□□□ 0.63
SKA2-208ENST00000583927 SMARCA2P51531 1590 aa18.95■□□□□ 0.62
SKA2-208ENST00000583927 ATAD2BQ9ULI0 1458 aa18.94■□□□□ 0.62
SKA2-208ENST00000583927 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
SKA2-208ENST00000583927 HMGXB3Q12766 1538 aa18.91■□□□□ 0.62
SKA2-208ENST00000583927 MROH2BQ7Z745 1585 aa18.81■□□□□ 0.6
SKA2-208ENST00000583927 BAZ1BQ9UIG0 1483 aaKnown RBP18.76■□□□□ 0.59
SKA2-208ENST00000583927 WIZO95785 1651 aa18.63■□□□□ 0.57
SKA2-208ENST00000583927 LAMC3Q9Y6N6 1575 aa18.55■□□□□ 0.56
SKA2-208ENST00000583927 AEBP2Q6ZN18 517 aaPredicted RBP18.54■□□□□ 0.56
SKA2-208ENST00000583927 RSF1Q96T23 1441 aaPredicted RBP18.54■□□□□ 0.56
SKA2-208ENST00000583927 NESP48681 1621 aa18.49■□□□□ 0.55
SKA2-208ENST00000583927 ERCC6Q03468 1493 aa18.47■□□□□ 0.55
SKA2-208ENST00000583927 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
SKA2-208ENST00000583927 CUX2O14529 1486 aa18.43■□□□□ 0.54
SKA2-208ENST00000583927 CADPSQ9ULU8 1353 aa18.38■□□□□ 0.53
SKA2-208ENST00000583927 KIF21AQ7Z4S6 1674 aa18.37■□□□□ 0.53
SKA2-208ENST00000583927 PDS5BQ9NTI5 1447 aa18.36■□□□□ 0.53
SKA2-208ENST00000583927 THOC2Q8NI27 1593 aaKnown RBP18.34■□□□□ 0.53
SKA2-208ENST00000583927 CFTRP13569 1480 aa18.27■□□□□ 0.52
SKA2-208ENST00000583927 PRDM2Q13029 1718 aa18.26■□□□□ 0.51
SKA2-208ENST00000583927 CCDC88BA6NC98 1476 aa18.18■□□□□ 0.5
SKA2-208ENST00000583927 MRC2Q9UBG0 1479 aa18.17■□□□□ 0.5
SKA2-208ENST00000583927 FANCD2Q9BXW9 1451 aa18.16■□□□□ 0.5
SKA2-208ENST00000583927 CEP164Q9UPV0 1460 aa18.16■□□□□ 0.5
SKA2-208ENST00000583927 WDR62O43379 1518 aa18.16■□□□□ 0.5
SKA2-208ENST00000583927 URB2Q14146 1524 aaKnown RBP17.99■□□□□ 0.47
SKA2-208ENST00000583927 DNAJC5Q9H3Z4 198 aa17.98■□□□□ 0.47
SKA2-208ENST00000583927 ABCC8Q09428 1581 aa17.92■□□□□ 0.46
SKA2-208ENST00000583927 TOPBP1Q92547 1522 aa17.87■□□□□ 0.45
SKA2-208ENST00000583927 DNMBPQ6XZF7 1577 aa17.87■□□□□ 0.45
SKA2-208ENST00000583927 SUPT5HO00267 1087 aaKnown RBP17.81■□□□□ 0.44
SKA2-208ENST00000583927 IFT140Q96RY7 1462 aa17.8■□□□□ 0.44
SKA2-208ENST00000583927 TARBP1Q13395 1621 aaKnown RBP17.74■□□□□ 0.43
SKA2-208ENST00000583927 POLA1P09884 1462 aaPredicted RBP17.7■□□□□ 0.42
SKA2-208ENST00000583927 ZNF608Q9ULD9 1512 aaPredicted RBP17.68■□□□□ 0.42
SKA2-208ENST00000583927 CUX1P39880 1505 aa17.67■□□□□ 0.42
SKA2-208ENST00000583927 EIF4G3O43432 1585 aaKnown RBP17.67■□□□□ 0.42
SKA2-208ENST00000583927 WDR97A6NE52 1622 aa17.66■□□□□ 0.42
SKA2-208ENST00000583927 FGD5Q6ZNL6 1462 aa17.62■□□□□ 0.41
SKA2-208ENST00000583927 SOGA1O94964 1423 aa17.6■□□□□ 0.41
SKA2-208ENST00000583927 RAD54L2Q9Y4B4 1467 aa17.57■□□□□ 0.4
SKA2-208ENST00000583927 OSCARQ8IYS5 282 aa17.56■□□□□ 0.4
SKA2-208ENST00000583927 BIVM-ERCC5R4GMW8 1640 aa17.56■□□□□ 0.4
SKA2-208ENST00000583927 AQRO60306 1485 aaKnown RBP eCLIP17.55■□□□□ 0.4
SKA2-208ENST00000583927 TOP2BQ02880 1626 aa17.53■□□□□ 0.4
SKA2-208ENST00000583927 CHD1O14646 1710 aa17.51■□□□□ 0.39
SKA2-208ENST00000583927 ABCA10Q8WWZ4 1543 aa17.49■□□□□ 0.39
SKA2-208ENST00000583927 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.39
SKA2-208ENST00000583927 TDRD9Q8NDG6 1382 aaKnown RBP17.47■□□□□ 0.39
SKA2-208ENST00000583927 PBRM1Q86U86 1689 aa17.47■□□□□ 0.39
SKA2-208ENST00000583927 SYNJ1O43426 1573 aa17.46■□□□□ 0.39
SKA2-208ENST00000583927 ABCA5Q8WWZ7 1642 aa17.46■□□□□ 0.39
SKA2-208ENST00000583927 GRIN2BQ13224 1484 aa17.44■□□□□ 0.38
SKA2-208ENST00000583927 MAGI1Q96QZ7 1491 aaPredicted RBP17.44■□□□□ 0.38
SKA2-208ENST00000583927 GAPVD1Q14C86 1478 aa17.42■□□□□ 0.38
SKA2-208ENST00000583927 SNAPC4Q5SXM2 1469 aa17.4■□□□□ 0.38
SKA2-208ENST00000583927 SYNJ2O15056 1496 aa17.36■□□□□ 0.37
SKA2-208ENST00000583927 RIMBP3CA6NJZ7 1639 aa17.35■□□□□ 0.37
SKA2-208ENST00000583927 RIMBP3BA6NNM3 1639 aa17.35■□□□□ 0.37
SKA2-208ENST00000583927 RIMBP3Q9UFD9 1639 aa17.35■□□□□ 0.37
SKA2-208ENST00000583927 CHIC1Q5VXU3 224 aa17.34■□□□□ 0.37
SKA2-208ENST00000583927 ARHGEF11O15085 1522 aa17.31■□□□□ 0.36
SKA2-208ENST00000583927 ERICH3Q5RHP9 1530 aa17.3■□□□□ 0.36
SKA2-208ENST00000583927 CLASP1Q7Z460 1538 aa17.3■□□□□ 0.36
SKA2-208ENST00000583927 FBLN2P98095 1184 aa17.29■□□□□ 0.36
SKA2-208ENST00000583927 CHMP7Q8WUX9 453 aaPredicted RBP17.28■□□□□ 0.36
SKA2-208ENST00000583927 ADAMTS12P58397 1594 aa17.28■□□□□ 0.36
SKA2-208ENST00000583927 GRIN2AQ12879 1464 aa17.22■□□□□ 0.35
SKA2-208ENST00000583927 FHAD1B1AJZ9 1412 aa17.21■□□□□ 0.35
SKA2-208ENST00000583927 TRIM41Q8WV44 630 aa17.19■□□□□ 0.34
SKA2-208ENST00000583927 NUP160Q12769 1436 aa17.17■□□□□ 0.34
SKA2-208ENST00000583927 ARAP1Q96P48 1450 aa17.14■□□□□ 0.33
SKA2-208ENST00000583927 CEP170Q5SW79 1584 aa17.14■□□□□ 0.33
SKA2-208ENST00000583927 CUL7Q14999 1698 aa17.13■□□□□ 0.33
SKA2-208ENST00000583927 KIF27Q86VH2 1401 aa17.13■□□□□ 0.33
SKA2-208ENST00000583927 SHROOM2Q13796 1616 aa17.11■□□□□ 0.33
SKA2-208ENST00000583927 IGF1RP08069 1367 aa17.08■□□□□ 0.32
SKA2-208ENST00000583927 CYB5RLQ6IPT4 315 aa17.06■□□□□ 0.32
SKA2-208ENST00000583927 RUSC2Q8N2Y8 1516 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms