RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 NISCHQ9Y2I1 1504 aa29.87■■■□□ 2.37
PTPRF-213ENST00000481019 CCDC180Q9P1Z9 1646 aa26.5■■□□□ 1.83
PTPRF-213ENST00000481019 ABCC9O60706 1549 aa26.02■■□□□ 1.76
PTPRF-213ENST00000481019 RB1CC1Q8TDY2 1594 aa24.94■■□□□ 1.58
PTPRF-213ENST00000481019 DCAF8L2P0C7V8 631 aa24.94■■□□□ 1.58
PTPRF-213ENST00000481019 NACADO15069 1562 aa24.9■■□□□ 1.58
PTPRF-213ENST00000481019 ZCCHC6Q5VYS8 1495 aaKnown RBP24.89■■□□□ 1.57
PTPRF-213ENST00000481019 MYO15BQ96JP2 1530 aa24.73■■□□□ 1.55
PTPRF-213ENST00000481019 DCAF1Q9Y4B6 1507 aa24.66■■□□□ 1.54
PTPRF-213ENST00000481019 UNC13AQ9UPW8 1703 aa24.49■■□□□ 1.51
PTPRF-213ENST00000481019 PABPN1Q86U42 306 aaKnown RBP eCLIP24.34■■□□□ 1.49
PTPRF-213ENST00000481019 BICRAQ9NZM4 1560 aa24.3■■□□□ 1.48
PTPRF-213ENST00000481019 SCRIBQ14160 1630 aa24.27■■□□□ 1.48
PTPRF-213ENST00000481019 DNAJC5BQ9UF47 199 aa23.98■■□□□ 1.43
PTPRF-213ENST00000481019 SHROOM4Q9ULL8 1493 aa23.86■■□□□ 1.41
PTPRF-213ENST00000481019 EIF4G1Q04637 1599 aaKnown RBP23.6■■□□□ 1.37
PTPRF-213ENST00000481019 CC2D2AQ9P2K1 1620 aa23.52■■□□□ 1.36
PTPRF-213ENST00000481019 CECR2Q9BXF3 1484 aa23.35■■□□□ 1.33
PTPRF-213ENST00000481019 SMARCA4P51532 1647 aa23.18■■□□□ 1.3
PTPRF-213ENST00000481019 BAZ1AQ9NRL2 1556 aaPredicted RBP23.1■■□□□ 1.29
PTPRF-213ENST00000481019 MROH2BQ7Z745 1585 aa23.08■■□□□ 1.29
PTPRF-213ENST00000481019 ATAD2BQ9ULI0 1458 aa23.05■■□□□ 1.28
PTPRF-213ENST00000481019 NCAPD3P42695 1498 aa23.01■■□□□ 1.27
PTPRF-213ENST00000481019 SMARCA2P51531 1590 aa22.96■■□□□ 1.27
PTPRF-213ENST00000481019 PEG3Q9GZU2 1588 aa22.93■■□□□ 1.26
PTPRF-213ENST00000481019 HMGXB3Q12766 1538 aa22.88■■□□□ 1.25
PTPRF-213ENST00000481019 BAZ1BQ9UIG0 1483 aaKnown RBP22.83■■□□□ 1.25
PTPRF-213ENST00000481019 WIZO95785 1651 aa22.83■■□□□ 1.24
PTPRF-213ENST00000481019 RSF1Q96T23 1441 aaPredicted RBP22.78■■□□□ 1.24
PTPRF-213ENST00000481019 NESP48681 1621 aa22.56■■□□□ 1.2
PTPRF-213ENST00000481019 TOP2AP11388 1531 aaKnown RBP22.52■■□□□ 1.2
PTPRF-213ENST00000481019 LAMC3Q9Y6N6 1575 aa22.38■■□□□ 1.17
PTPRF-213ENST00000481019 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
PTPRF-213ENST00000481019 CADPSQ9ULU8 1353 aa22.34■■□□□ 1.17
PTPRF-213ENST00000481019 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
PTPRF-213ENST00000481019 KIF21AQ7Z4S6 1674 aa22.26■■□□□ 1.15
PTPRF-213ENST00000481019 CFTRP13569 1480 aa22.22■■□□□ 1.15
PTPRF-213ENST00000481019 PDS5BQ9NTI5 1447 aa22.21■■□□□ 1.15
PTPRF-213ENST00000481019 SUPT5HO00267 1087 aaKnown RBP22.2■■□□□ 1.14
PTPRF-213ENST00000481019 THOC2Q8NI27 1593 aaKnown RBP22.17■■□□□ 1.14
PTPRF-213ENST00000481019 CUX2O14529 1486 aa22.09■■□□□ 1.13
PTPRF-213ENST00000481019 FANCD2Q9BXW9 1451 aa22.09■■□□□ 1.13
PTPRF-213ENST00000481019 CEP164Q9UPV0 1460 aa22.04■■□□□ 1.12
PTPRF-213ENST00000481019 PRDM2Q13029 1718 aa22.03■■□□□ 1.12
PTPRF-213ENST00000481019 MRC2Q9UBG0 1479 aa22.03■■□□□ 1.12
PTPRF-213ENST00000481019 WDR62O43379 1518 aa21.96■■□□□ 1.11
PTPRF-213ENST00000481019 URB2Q14146 1524 aaKnown RBP21.93■■□□□ 1.1
PTPRF-213ENST00000481019 TOPBP1Q92547 1522 aa21.76■■□□□ 1.07
PTPRF-213ENST00000481019 DNMBPQ6XZF7 1577 aa21.71■■□□□ 1.07
PTPRF-213ENST00000481019 ABCC8Q09428 1581 aa21.65■■□□□ 1.06
PTPRF-213ENST00000481019 CUX1P39880 1505 aa21.64■■□□□ 1.05
PTPRF-213ENST00000481019 ZNF608Q9ULD9 1512 aaPredicted RBP21.59■■□□□ 1.05
PTPRF-213ENST00000481019 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.05
PTPRF-213ENST00000481019 IFT140Q96RY7 1462 aa21.58■■□□□ 1.04
PTPRF-213ENST00000481019 TARBP1Q13395 1621 aaKnown RBP21.55■■□□□ 1.04
PTPRF-213ENST00000481019 FGD5Q6ZNL6 1462 aa21.53■■□□□ 1.04
PTPRF-213ENST00000481019 RAD54L2Q9Y4B4 1467 aa21.53■■□□□ 1.04
PTPRF-213ENST00000481019 SOGA1O94964 1423 aa21.46■■□□□ 1.03
PTPRF-213ENST00000481019 SYNJ1O43426 1573 aa21.46■■□□□ 1.03
PTPRF-213ENST00000481019 DNAJC5Q9H3Z4 198 aa21.46■■□□□ 1.03
PTPRF-213ENST00000481019 EIF4G3O43432 1585 aaKnown RBP21.45■■□□□ 1.02
PTPRF-213ENST00000481019 AQRO60306 1485 aaKnown RBP eCLIP21.45■■□□□ 1.021e-6■□□□□ 8.9
PTPRF-213ENST00000481019 WRNQ14191 1432 aaPredicted RBP eCLIP21.43■■□□□ 1.02
PTPRF-213ENST00000481019 TOP2BQ02880 1626 aa21.4■■□□□ 1.02
PTPRF-213ENST00000481019 BIVM-ERCC5R4GMW8 1640 aa21.4■■□□□ 1.02
PTPRF-213ENST00000481019 TDRD9Q8NDG6 1382 aaKnown RBP21.38■■□□□ 1.01
PTPRF-213ENST00000481019 WDR97A6NE52 1622 aa21.37■■□□□ 1.01
PTPRF-213ENST00000481019 ABCA10Q8WWZ4 1543 aa21.29■■□□□ 1
PTPRF-213ENST00000481019 ABCA5Q8WWZ7 1642 aa21.24■□□□□ 0.99
PTPRF-213ENST00000481019 SNAPC4Q5SXM2 1469 aa21.22■□□□□ 0.99
PTPRF-213ENST00000481019 GAPVD1Q14C86 1478 aa21.21■□□□□ 0.99
PTPRF-213ENST00000481019 PBRM1Q86U86 1689 aa21.2■□□□□ 0.98
PTPRF-213ENST00000481019 CHD1O14646 1710 aa21.2■□□□□ 0.98
PTPRF-213ENST00000481019 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
PTPRF-213ENST00000481019 OSCARQ8IYS5 282 aa21.18■□□□□ 0.98
PTPRF-213ENST00000481019 MAGI1Q96QZ7 1491 aaPredicted RBP21.13■□□□□ 0.97
PTPRF-213ENST00000481019 FBLN2P98095 1184 aa21.12■□□□□ 0.97
PTPRF-213ENST00000481019 SYNJ2O15056 1496 aa21.06■□□□□ 0.96
PTPRF-213ENST00000481019 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
PTPRF-213ENST00000481019 CHMP7Q8WUX9 453 aaPredicted RBP21.03■□□□□ 0.96
PTPRF-213ENST00000481019 ERICH3Q5RHP9 1530 aa21.01■□□□□ 0.95
PTPRF-213ENST00000481019 CLASP1Q7Z460 1538 aa20.96■□□□□ 0.95
PTPRF-213ENST00000481019 FHAD1B1AJZ9 1412 aa20.95■□□□□ 0.95
PTPRF-213ENST00000481019 KIF27Q86VH2 1401 aa20.95■□□□□ 0.94
PTPRF-213ENST00000481019 GRIN2AQ12879 1464 aa20.94■□□□□ 0.94
PTPRF-213ENST00000481019 IGF1RP08069 1367 aa20.94■□□□□ 0.94
PTPRF-213ENST00000481019 RIMBP3CA6NJZ7 1639 aa20.93■□□□□ 0.94
PTPRF-213ENST00000481019 RIMBP3BA6NNM3 1639 aa20.93■□□□□ 0.94
PTPRF-213ENST00000481019 RIMBP3Q9UFD9 1639 aa20.93■□□□□ 0.94
PTPRF-213ENST00000481019 RUSC2Q8N2Y8 1516 aa20.92■□□□□ 0.94
PTPRF-213ENST00000481019 TRIM41Q8WV44 630 aa20.9■□□□□ 0.94
PTPRF-213ENST00000481019 CEP170Q5SW79 1584 aa20.89■□□□□ 0.94
PTPRF-213ENST00000481019 ARHGEF11O15085 1522 aa20.89■□□□□ 0.94
PTPRF-213ENST00000481019 NUP160Q12769 1436 aa20.86■□□□□ 0.93
PTPRF-213ENST00000481019 CUL7Q14999 1698 aa20.82■□□□□ 0.92
PTPRF-213ENST00000481019 CARMIL1Q5VZK9 1371 aa20.77■□□□□ 0.92
PTPRF-213ENST00000481019 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
PTPRF-213ENST00000481019 ERCC6L2Q5T890 1561 aa20.76■□□□□ 0.91
PTPRF-213ENST00000481019 CHIC1Q5VXU3 224 aa20.73■□□□□ 0.91
PTPRF-213ENST00000481019 SHROOM2Q13796 1616 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms