RNA–Protein interactions for RNA: ENST00000515587.1

PDCD6-211, Transcript of programmed cell death 6, humanhuman

TSL 1 (best)

Gene PDCD6, Length 855 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD6-211ENST00000515587 NISCHQ9Y2I1 1504 aa35.88■■■■□ 3.33
PDCD6-211ENST00000515587 ABCC9O60706 1549 aa32■■■□□ 2.71
PDCD6-211ENST00000515587 CCDC180Q9P1Z9 1646 aa31.84■■■□□ 2.69
PDCD6-211ENST00000515587 DNAJC5BQ9UF47 199 aa30.92■■■□□ 2.54
PDCD6-211ENST00000515587 ZCCHC6Q5VYS8 1495 aaKnown RBP29.95■■■□□ 2.39
PDCD6-211ENST00000515587 RB1CC1Q8TDY2 1594 aa29.94■■■□□ 2.38
PDCD6-211ENST00000515587 DCAF8L2P0C7V8 631 aa29.89■■■□□ 2.38
PDCD6-211ENST00000515587 NACADO15069 1562 aa29.82■■■□□ 2.36
PDCD6-211ENST00000515587 MYO15BQ96JP2 1530 aa29.72■■■□□ 2.35
PDCD6-211ENST00000515587 DCAF1Q9Y4B6 1507 aa29.72■■■□□ 2.35
PDCD6-211ENST00000515587 PABPN1Q86U42 306 aaKnown RBP eCLIP29.72■■■□□ 2.35
PDCD6-211ENST00000515587 UNC13AQ9UPW8 1703 aa29.21■■■□□ 2.27
PDCD6-211ENST00000515587 BICRAQ9NZM4 1560 aa29.17■■■□□ 2.26
PDCD6-211ENST00000515587 SCRIBQ14160 1630 aa29.05■■■□□ 2.24
PDCD6-211ENST00000515587 DNAJC5Q9H3Z4 198 aa28.96■■■□□ 2.23
PDCD6-211ENST00000515587 CECR2Q9BXF3 1484 aa28.9■■■□□ 2.22
PDCD6-211ENST00000515587 CC2D2AQ9P2K1 1620 aa28.8■■■□□ 2.2
PDCD6-211ENST00000515587 SHROOM4Q9ULL8 1493 aa28.59■■■□□ 2.17
PDCD6-211ENST00000515587 EIF4G1Q04637 1599 aaKnown RBP28.51■■■□□ 2.15
PDCD6-211ENST00000515587 CUX2O14529 1486 aa27.85■■■□□ 2.05
PDCD6-211ENST00000515587 BAZ1AQ9NRL2 1556 aaPredicted RBP27.83■■■□□ 2.05
PDCD6-211ENST00000515587 SMARCA4P51532 1647 aa27.81■■■□□ 2.04
PDCD6-211ENST00000515587 MROH2BQ7Z745 1585 aa27.65■■■□□ 2.02
PDCD6-211ENST00000515587 ERCC6Q03468 1493 aa27.64■■■□□ 2.02
PDCD6-211ENST00000515587 SMARCA2P51531 1590 aa27.57■■■□□ 2
PDCD6-211ENST00000515587 ATAD2BQ9ULI0 1458 aa27.52■■■□□ 2
PDCD6-211ENST00000515587 PEG3Q9GZU2 1588 aa27.51■■□□□ 1.99
PDCD6-211ENST00000515587 NCAPD3P42695 1498 aa27.46■■□□□ 1.99
PDCD6-211ENST00000515587 RSF1Q96T23 1441 aaPredicted RBP27.43■■□□□ 1.98
PDCD6-211ENST00000515587 WIZO95785 1651 aa27.41■■□□□ 1.98
PDCD6-211ENST00000515587 HMGXB3Q12766 1538 aa27.4■■□□□ 1.98
PDCD6-211ENST00000515587 TRIM41Q8WV44 630 aa27.37■■□□□ 1.97
PDCD6-211ENST00000515587 BAZ1BQ9UIG0 1483 aaKnown RBP27.37■■□□□ 1.97
PDCD6-211ENST00000515587 NESP48681 1621 aa27.25■■□□□ 1.95
PDCD6-211ENST00000515587 TOP2AP11388 1531 aaKnown RBP27.14■■□□□ 1.94
PDCD6-211ENST00000515587 THOC2Q8NI27 1593 aaKnown RBP27.05■■□□□ 1.92
PDCD6-211ENST00000515587 SUPT5HO00267 1087 aaKnown RBP27.05■■□□□ 1.92
PDCD6-211ENST00000515587 CCDC88BA6NC98 1476 aa26.79■■□□□ 1.88
PDCD6-211ENST00000515587 LAMC3Q9Y6N6 1575 aa26.77■■□□□ 1.88
PDCD6-211ENST00000515587 KIF21AQ7Z4S6 1674 aa26.74■■□□□ 1.87
PDCD6-211ENST00000515587 PDS5BQ9NTI5 1447 aa26.71■■□□□ 1.87
PDCD6-211ENST00000515587 CADPSQ9ULU8 1353 aa26.69■■□□□ 1.86
PDCD6-211ENST00000515587 CFTRP13569 1480 aa26.59■■□□□ 1.85
PDCD6-211ENST00000515587 PRDM2Q13029 1718 aa26.55■■□□□ 1.84
PDCD6-211ENST00000515587 MRC2Q9UBG0 1479 aa26.55■■□□□ 1.84
PDCD6-211ENST00000515587 OSCARQ8IYS5 282 aa26.5■■□□□ 1.83
PDCD6-211ENST00000515587 WDR62O43379 1518 aa26.49■■□□□ 1.83
PDCD6-211ENST00000515587 FANCD2Q9BXW9 1451 aa26.4■■□□□ 1.82
PDCD6-211ENST00000515587 CEP164Q9UPV0 1460 aa26.36■■□□□ 1.81
PDCD6-211ENST00000515587 RIMBP3CA6NJZ7 1639 aa26.21■■□□□ 1.79
PDCD6-211ENST00000515587 RIMBP3BA6NNM3 1639 aa26.21■■□□□ 1.79
PDCD6-211ENST00000515587 RIMBP3Q9UFD9 1639 aa26.21■■□□□ 1.79
PDCD6-211ENST00000515587 URB2Q14146 1524 aaKnown RBP26.09■■□□□ 1.77
PDCD6-211ENST00000515587 ABCC8Q09428 1581 aa26.08■■□□□ 1.77
PDCD6-211ENST00000515587 ARHGEF11O15085 1522 aa26.07■■□□□ 1.76
PDCD6-211ENST00000515587 DNMBPQ6XZF7 1577 aa26.04■■□□□ 1.76
PDCD6-211ENST00000515587 TOPBP1Q92547 1522 aa26.01■■□□□ 1.75
PDCD6-211ENST00000515587 CYB5RLQ6IPT4 315 aa26■■□□□ 1.75
PDCD6-211ENST00000515587 TRHP20396 242 aaPredicted RBP25.99■■□□□ 1.75
PDCD6-211ENST00000515587 CUX1P39880 1505 aa25.93■■□□□ 1.74
PDCD6-211ENST00000515587 WRNQ14191 1432 aaPredicted RBP eCLIP25.9■■□□□ 1.74
PDCD6-211ENST00000515587 ZNF608Q9ULD9 1512 aaPredicted RBP25.88■■□□□ 1.73
PDCD6-211ENST00000515587 AEBP2Q6ZN18 517 aaPredicted RBP25.86■■□□□ 1.73
PDCD6-211ENST00000515587 TOP2BQ02880 1626 aa25.84■■□□□ 1.73
PDCD6-211ENST00000515587 BIVM-ERCC5R4GMW8 1640 aa25.84■■□□□ 1.73
PDCD6-211ENST00000515587 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
PDCD6-211ENST00000515587 POLA1P09884 1462 aaPredicted RBP25.8■■□□□ 1.72
PDCD6-211ENST00000515587 FGD5Q6ZNL6 1462 aa25.8■■□□□ 1.72
PDCD6-211ENST00000515587 IFT140Q96RY7 1462 aa25.79■■□□□ 1.72
PDCD6-211ENST00000515587 ARAP1Q96P48 1450 aa25.78■■□□□ 1.72
PDCD6-211ENST00000515587 SOGA1O94964 1423 aa25.72■■□□□ 1.71
PDCD6-211ENST00000515587 TARBP1Q13395 1621 aaKnown RBP25.71■■□□□ 1.71
PDCD6-211ENST00000515587 RAD54L2Q9Y4B4 1467 aa25.67■■□□□ 1.7
PDCD6-211ENST00000515587 WDR97A6NE52 1622 aa25.6■■□□□ 1.69
PDCD6-211ENST00000515587 EIF4G3O43432 1585 aaKnown RBP25.6■■□□□ 1.69
PDCD6-211ENST00000515587 FBLN2P98095 1184 aa25.57■■□□□ 1.68
PDCD6-211ENST00000515587 ABCA10Q8WWZ4 1543 aa25.57■■□□□ 1.68
PDCD6-211ENST00000515587 CHD1O14646 1710 aa25.54■■□□□ 1.68
PDCD6-211ENST00000515587 AQRO60306 1485 aaKnown RBP eCLIP25.54■■□□□ 1.68
PDCD6-211ENST00000515587 TDRD9Q8NDG6 1382 aaKnown RBP25.52■■□□□ 1.68
PDCD6-211ENST00000515587 ABCA5Q8WWZ7 1642 aa25.45■■□□□ 1.67
PDCD6-211ENST00000515587 GAPVD1Q14C86 1478 aa25.44■■□□□ 1.66
PDCD6-211ENST00000515587 PBRM1Q86U86 1689 aa25.42■■□□□ 1.66
PDCD6-211ENST00000515587 GRIN2BQ13224 1484 aa25.4■■□□□ 1.66
PDCD6-211ENST00000515587 CHIC1Q5VXU3 224 aa25.39■■□□□ 1.66
PDCD6-211ENST00000515587 KIF27Q86VH2 1401 aa25.36■■□□□ 1.65
PDCD6-211ENST00000515587 SNAPC4Q5SXM2 1469 aa25.3■■□□□ 1.64
PDCD6-211ENST00000515587 MAGI1Q96QZ7 1491 aaPredicted RBP25.3■■□□□ 1.64
PDCD6-211ENST00000515587 ERICH3Q5RHP9 1530 aa25.3■■□□□ 1.64
PDCD6-211ENST00000515587 CLASP1Q7Z460 1538 aa25.28■■□□□ 1.64
PDCD6-211ENST00000515587 ADAMTS12P58397 1594 aa25.19■■□□□ 1.62
PDCD6-211ENST00000515587 CHMP7Q8WUX9 453 aaPredicted RBP25.19■■□□□ 1.62
PDCD6-211ENST00000515587 SYNJ2O15056 1496 aa25.19■■□□□ 1.62
PDCD6-211ENST00000515587 CUL7Q14999 1698 aa25.18■■□□□ 1.62
PDCD6-211ENST00000515587 FHAD1B1AJZ9 1412 aa25.16■■□□□ 1.62
PDCD6-211ENST00000515587 RUSC2Q8N2Y8 1516 aa25.16■■□□□ 1.62
PDCD6-211ENST00000515587 IGF1RP08069 1367 aa25.16■■□□□ 1.62
PDCD6-211ENST00000515587 EEA1Q15075 1411 aa25.12■■□□□ 1.61
PDCD6-211ENST00000515587 GRIN2AQ12879 1464 aa25.06■■□□□ 1.6
PDCD6-211ENST00000515587 CARMIL1Q5VZK9 1371 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms