RNA–Protein interactions for RNA: ENST00000505526.1

PDCD6-203, Transcript of programmed cell death 6, humanhuman

TSL 1 (best)

Gene PDCD6, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD6-203ENST00000505526 NISCHQ9Y2I1 1504 aa38.88■■■■□ 3.81
PDCD6-203ENST00000505526 ABCC9O60706 1549 aa35.41■■■■□ 3.26
PDCD6-203ENST00000505526 CCDC180Q9P1Z9 1646 aa35.02■■■■□ 3.2
PDCD6-203ENST00000505526 DNAJC5BQ9UF47 199 aa33.55■■■□□ 2.96
PDCD6-203ENST00000505526 RB1CC1Q8TDY2 1594 aa33.53■■■□□ 2.96
PDCD6-203ENST00000505526 NACADO15069 1562 aa33.22■■■□□ 2.91
PDCD6-203ENST00000505526 DCAF8L2P0C7V8 631 aa33.02■■■□□ 2.88
PDCD6-203ENST00000505526 PABPN1Q86U42 306 aaKnown RBP eCLIP32.93■■■□□ 2.86
PDCD6-203ENST00000505526 UNC13AQ9UPW8 1703 aa32.74■■■□□ 2.83
PDCD6-203ENST00000505526 MYO15BQ96JP2 1530 aa32.63■■■□□ 2.81
PDCD6-203ENST00000505526 BICRAQ9NZM4 1560 aa32.57■■■□□ 2.8
PDCD6-203ENST00000505526 ZCCHC6Q5VYS8 1495 aaKnown RBP32.14■■■□□ 2.74
PDCD6-203ENST00000505526 DCAF1Q9Y4B6 1507 aa32.09■■■□□ 2.73
PDCD6-203ENST00000505526 SHROOM4Q9ULL8 1493 aa32.08■■■□□ 2.73
PDCD6-203ENST00000505526 CC2D2AQ9P2K1 1620 aa31.96■■■□□ 2.71
PDCD6-203ENST00000505526 CECR2Q9BXF3 1484 aa31.94■■■□□ 2.7
PDCD6-203ENST00000505526 SCRIBQ14160 1630 aa31.91■■■□□ 2.7
PDCD6-203ENST00000505526 EIF4G1Q04637 1599 aaKnown RBP31.8■■■□□ 2.68
PDCD6-203ENST00000505526 DNAJC5Q9H3Z4 198 aa31.08■■■□□ 2.57
PDCD6-203ENST00000505526 NCAPD3P42695 1498 aa30.68■■■□□ 2.5
PDCD6-203ENST00000505526 CUX2O14529 1486 aa30.66■■■□□ 2.5
PDCD6-203ENST00000505526 ERCC6Q03468 1493 aa30.61■■■□□ 2.49
PDCD6-203ENST00000505526 ATAD2BQ9ULI0 1458 aa30.54■■■□□ 2.48
PDCD6-203ENST00000505526 SMARCA2P51531 1590 aa30.42■■■□□ 2.46
PDCD6-203ENST00000505526 HMGXB3Q12766 1538 aa30.4■■■□□ 2.46
PDCD6-203ENST00000505526 SMARCA4P51532 1647 aa30.4■■■□□ 2.46
PDCD6-203ENST00000505526 NESP48681 1621 aa30.32■■■□□ 2.44
PDCD6-203ENST00000505526 BAZ1BQ9UIG0 1483 aaKnown RBP30.22■■■□□ 2.43
PDCD6-203ENST00000505526 BAZ1AQ9NRL2 1556 aaPredicted RBP30.21■■■□□ 2.43
PDCD6-203ENST00000505526 PEG3Q9GZU2 1588 aa30.1■■■□□ 2.41
PDCD6-203ENST00000505526 THOC2Q8NI27 1593 aaKnown RBP30.06■■■□□ 2.4
PDCD6-203ENST00000505526 LAMC3Q9Y6N6 1575 aa30.03■■■□□ 2.4
PDCD6-203ENST00000505526 MROH2BQ7Z745 1585 aa29.96■■■□□ 2.39
PDCD6-203ENST00000505526 PDS5BQ9NTI5 1447 aa29.89■■■□□ 2.38
PDCD6-203ENST00000505526 KIF21AQ7Z4S6 1674 aa29.89■■■□□ 2.37
PDCD6-203ENST00000505526 CADPSQ9ULU8 1353 aa29.74■■■□□ 2.35
PDCD6-203ENST00000505526 MRC2Q9UBG0 1479 aa29.64■■■□□ 2.34
PDCD6-203ENST00000505526 WIZO95785 1651 aa29.58■■■□□ 2.33
PDCD6-203ENST00000505526 WDR62O43379 1518 aa29.57■■■□□ 2.32
PDCD6-203ENST00000505526 TRIM41Q8WV44 630 aa29.57■■■□□ 2.32
PDCD6-203ENST00000505526 CEP164Q9UPV0 1460 aa29.45■■■□□ 2.31
PDCD6-203ENST00000505526 FANCD2Q9BXW9 1451 aa29.39■■■□□ 2.3
PDCD6-203ENST00000505526 CFTRP13569 1480 aa29.31■■■□□ 2.28
PDCD6-203ENST00000505526 OSCARQ8IYS5 282 aa29.23■■■□□ 2.27
PDCD6-203ENST00000505526 RSF1Q96T23 1441 aaPredicted RBP29.21■■■□□ 2.27
PDCD6-203ENST00000505526 TOP2AP11388 1531 aaKnown RBP29.18■■■□□ 2.26
PDCD6-203ENST00000505526 URB2Q14146 1524 aaKnown RBP29.18■■■□□ 2.26
PDCD6-203ENST00000505526 PRDM2Q13029 1718 aa28.95■■■□□ 2.22
PDCD6-203ENST00000505526 IFT140Q96RY7 1462 aa28.88■■■□□ 2.21
PDCD6-203ENST00000505526 ZNF608Q9ULD9 1512 aaPredicted RBP28.88■■■□□ 2.21
PDCD6-203ENST00000505526 CCDC88BA6NC98 1476 aa28.87■■■□□ 2.21
PDCD6-203ENST00000505526 RIMBP3CA6NJZ7 1639 aa28.85■■■□□ 2.21
PDCD6-203ENST00000505526 RIMBP3BA6NNM3 1639 aa28.85■■■□□ 2.21
PDCD6-203ENST00000505526 RIMBP3Q9UFD9 1639 aa28.85■■■□□ 2.21
PDCD6-203ENST00000505526 TOPBP1Q92547 1522 aa28.79■■■□□ 2.2
PDCD6-203ENST00000505526 ARHGEF11O15085 1522 aa28.73■■■□□ 2.19
PDCD6-203ENST00000505526 ABCC8Q09428 1581 aa28.7■■■□□ 2.19
PDCD6-203ENST00000505526 EIF4G3O43432 1585 aaKnown RBP28.68■■■□□ 2.18
PDCD6-203ENST00000505526 DNMBPQ6XZF7 1577 aa28.65■■■□□ 2.18
PDCD6-203ENST00000505526 AQRO60306 1485 aaKnown RBP eCLIP28.58■■■□□ 2.171e-6■■■■□ 25.2
PDCD6-203ENST00000505526 CYB5RLQ6IPT4 315 aa28.57■■■□□ 2.16
PDCD6-203ENST00000505526 TARBP1Q13395 1621 aaKnown RBP28.56■■■□□ 2.16
PDCD6-203ENST00000505526 CHD1O14646 1710 aa28.53■■■□□ 2.16
PDCD6-203ENST00000505526 FBLN2P98095 1184 aa28.48■■■□□ 2.15
PDCD6-203ENST00000505526 POLA1P09884 1462 aaPredicted RBP28.48■■■□□ 2.15
PDCD6-203ENST00000505526 ARAP1Q96P48 1450 aa28.42■■■□□ 2.14
PDCD6-203ENST00000505526 RAD54L2Q9Y4B4 1467 aa28.39■■■□□ 2.14
PDCD6-203ENST00000505526 TRHP20396 242 aaPredicted RBP28.38■■■□□ 2.13
PDCD6-203ENST00000505526 SOGA1O94964 1423 aa28.36■■■□□ 2.13
PDCD6-203ENST00000505526 TDRD9Q8NDG6 1382 aaKnown RBP28.36■■■□□ 2.13
PDCD6-203ENST00000505526 SNAPC4Q5SXM2 1469 aa28.27■■■□□ 2.12
PDCD6-203ENST00000505526 FGD5Q6ZNL6 1462 aa28.25■■■□□ 2.11
PDCD6-203ENST00000505526 WDR97A6NE52 1622 aa28.23■■■□□ 2.11
PDCD6-203ENST00000505526 CLASP1Q7Z460 1538 aa28.21■■■□□ 2.11
PDCD6-203ENST00000505526 CHMP7Q8WUX9 453 aaPredicted RBP28.21■■■□□ 2.11
PDCD6-203ENST00000505526 MAGI1Q96QZ7 1491 aaPredicted RBP28.17■■■□□ 2.1
PDCD6-203ENST00000505526 CUX1P39880 1505 aa28.16■■■□□ 2.1
PDCD6-203ENST00000505526 SYNJ1O43426 1573 aa28.16■■■□□ 2.1
PDCD6-203ENST00000505526 GRIN2BQ13224 1484 aa28.14■■■□□ 2.1
PDCD6-203ENST00000505526 SYNJ2O15056 1496 aa28.09■■■□□ 2.09
PDCD6-203ENST00000505526 GAPVD1Q14C86 1478 aa28■■■□□ 2.07
PDCD6-203ENST00000505526 PBRM1Q86U86 1689 aa27.98■■■□□ 2.07
PDCD6-203ENST00000505526 SUPT5HO00267 1087 aaKnown RBP27.95■■■□□ 2.06
PDCD6-203ENST00000505526 ABCA10Q8WWZ4 1543 aa27.91■■■□□ 2.06
PDCD6-203ENST00000505526 ABCA5Q8WWZ7 1642 aa27.89■■■□□ 2.06
PDCD6-203ENST00000505526 AEBP2Q6ZN18 517 aaPredicted RBP27.81■■■□□ 2.04
PDCD6-203ENST00000505526 GRIN2AQ12879 1464 aa27.78■■■□□ 2.04
PDCD6-203ENST00000505526 ERCC6L2Q5T890 1561 aa27.75■■■□□ 2.03
PDCD6-203ENST00000505526 WRNQ14191 1432 aaPredicted RBP eCLIP27.73■■■□□ 2.034e-7■■■□□ 16.7
PDCD6-203ENST00000505526 ADAMTS12P58397 1594 aa27.7■■■□□ 2.03
PDCD6-203ENST00000505526 NUP160Q12769 1436 aa27.7■■■□□ 2.02
PDCD6-203ENST00000505526 CEP170Q5SW79 1584 aa27.69■■■□□ 2.02
PDCD6-203ENST00000505526 FHAD1B1AJZ9 1412 aa27.63■■■□□ 2.01
PDCD6-203ENST00000505526 TOP2BQ02880 1626 aa27.61■■■□□ 2.01
PDCD6-203ENST00000505526 BIVM-ERCC5R4GMW8 1640 aa27.61■■■□□ 2.01
PDCD6-203ENST00000505526 SHROOM2Q13796 1616 aa27.6■■■□□ 2.01
PDCD6-203ENST00000505526 ERICH3Q5RHP9 1530 aa27.55■■■□□ 2
PDCD6-203ENST00000505526 PRG4Q92954 1404 aaPredicted RBP27.47■■□□□ 1.99
PDCD6-203ENST00000505526 JPH4Q96JJ6 628 aa27.44■■□□□ 1.98
PDCD6-203ENST00000505526 KIF13AQ9H1H9 1805 aa27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms