RNA–Protein interactions for RNA: ENST00000509357.5

PDLIM5-213, Transcript of PDZ and LIM domain 5, humanhuman

TSL 5

Gene PDLIM5, Length 554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-213ENST00000509357 NISCHQ9Y2I1 1504 aa21.2■□□□□ 0.98
PDLIM5-213ENST00000509357 CCDC180Q9P1Z9 1646 aa18.79■□□□□ 0.6
PDLIM5-213ENST00000509357 ABCC9O60706 1549 aa18.71■□□□□ 0.59
PDLIM5-213ENST00000509357 DCAF8L2P0C7V8 631 aa17.98■□□□□ 0.47
PDLIM5-213ENST00000509357 RB1CC1Q8TDY2 1594 aa17.86■□□□□ 0.45
PDLIM5-213ENST00000509357 NACADO15069 1562 aa17.78■□□□□ 0.44
PDLIM5-213ENST00000509357 ZCCHC6Q5VYS8 1495 aaKnown RBP17.72■□□□□ 0.43
PDLIM5-213ENST00000509357 MYO15BQ96JP2 1530 aa17.57■□□□□ 0.4
PDLIM5-213ENST00000509357 PABPN1Q86U42 306 aaKnown RBP eCLIP17.52■□□□□ 0.4
PDLIM5-213ENST00000509357 DCAF1Q9Y4B6 1507 aa17.52■□□□□ 0.39
PDLIM5-213ENST00000509357 UNC13AQ9UPW8 1703 aa17.37■□□□□ 0.37
PDLIM5-213ENST00000509357 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
PDLIM5-213ENST00000509357 BICRAQ9NZM4 1560 aa17.26■□□□□ 0.35
PDLIM5-213ENST00000509357 SCRIBQ14160 1630 aa17.24■□□□□ 0.35
PDLIM5-213ENST00000509357 SHROOM4Q9ULL8 1493 aa17.07■□□□□ 0.32
PDLIM5-213ENST00000509357 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
PDLIM5-213ENST00000509357 CC2D2AQ9P2K1 1620 aa16.85■□□□□ 0.29
PDLIM5-213ENST00000509357 CECR2Q9BXF3 1484 aa16.82■□□□□ 0.28
PDLIM5-213ENST00000509357 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
PDLIM5-213ENST00000509357 NCAPD3P42695 1498 aa16.42■□□□□ 0.22
PDLIM5-213ENST00000509357 ATAD2BQ9ULI0 1458 aa16.42■□□□□ 0.22
PDLIM5-213ENST00000509357 BAZ1AQ9NRL2 1556 aaPredicted RBP16.41■□□□□ 0.22
PDLIM5-213ENST00000509357 MROH2BQ7Z745 1585 aa16.4■□□□□ 0.22
PDLIM5-213ENST00000509357 SMARCA2P51531 1590 aa16.38■□□□□ 0.21
PDLIM5-213ENST00000509357 BAZ1BQ9UIG0 1483 aaKnown RBP16.31■□□□□ 0.2
PDLIM5-213ENST00000509357 HMGXB3Q12766 1538 aa16.29■□□□□ 0.2
PDLIM5-213ENST00000509357 PEG3Q9GZU2 1588 aa16.27■□□□□ 0.2
PDLIM5-213ENST00000509357 WIZO95785 1651 aa16.26■□□□□ 0.19
PDLIM5-213ENST00000509357 RSF1Q96T23 1441 aaPredicted RBP16.22■□□□□ 0.19
PDLIM5-213ENST00000509357 ERCC6Q03468 1493 aa16.18■□□□□ 0.18
PDLIM5-213ENST00000509357 NESP48681 1621 aa16.1■□□□□ 0.17
PDLIM5-213ENST00000509357 TOP2AP11388 1531 aaKnown RBP16.01■□□□□ 0.15
PDLIM5-213ENST00000509357 LAMC3Q9Y6N6 1575 aa16■□□□□ 0.15
PDLIM5-213ENST00000509357 CADPSQ9ULU8 1353 aa15.99■□□□□ 0.15
PDLIM5-213ENST00000509357 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
PDLIM5-213ENST00000509357 CUX2O14529 1486 aa15.97■□□□□ 0.15
PDLIM5-213ENST00000509357 KIF21AQ7Z4S6 1674 aa15.83■□□□□ 0.13
PDLIM5-213ENST00000509357 CCDC88BA6NC98 1476 aa15.83■□□□□ 0.12
PDLIM5-213ENST00000509357 SUPT5HO00267 1087 aaKnown RBP15.82■□□□□ 0.12
PDLIM5-213ENST00000509357 THOC2Q8NI27 1593 aaKnown RBP15.82■□□□□ 0.12
PDLIM5-213ENST00000509357 CFTRP13569 1480 aa15.81■□□□□ 0.12
PDLIM5-213ENST00000509357 FANCD2Q9BXW9 1451 aa15.79■□□□□ 0.12
PDLIM5-213ENST00000509357 MRC2Q9UBG0 1479 aa15.79■□□□□ 0.12
PDLIM5-213ENST00000509357 CEP164Q9UPV0 1460 aa15.79■□□□□ 0.12
PDLIM5-213ENST00000509357 DNAJC5Q9H3Z4 198 aa15.76■□□□□ 0.11
PDLIM5-213ENST00000509357 WDR62O43379 1518 aa15.68■□□□□ 0.1
PDLIM5-213ENST00000509357 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
PDLIM5-213ENST00000509357 URB2Q14146 1524 aaKnown RBP15.61■□□□□ 0.09
PDLIM5-213ENST00000509357 ABCC8Q09428 1581 aa15.5■□□□□ 0.07
PDLIM5-213ENST00000509357 TOPBP1Q92547 1522 aa15.49■□□□□ 0.07
PDLIM5-213ENST00000509357 IFT140Q96RY7 1462 aa15.46■□□□□ 0.07
PDLIM5-213ENST00000509357 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
PDLIM5-213ENST00000509357 ZNF608Q9ULD9 1512 aaPredicted RBP15.4■□□□□ 0.06
PDLIM5-213ENST00000509357 OSCARQ8IYS5 282 aa15.4■□□□□ 0.06
PDLIM5-213ENST00000509357 CUX1P39880 1505 aa15.38■□□□□ 0.05
PDLIM5-213ENST00000509357 POLA1P09884 1462 aaPredicted RBP15.35■□□□□ 0.05
PDLIM5-213ENST00000509357 SOGA1O94964 1423 aa15.34■□□□□ 0.05
PDLIM5-213ENST00000509357 AQRO60306 1485 aaKnown RBP eCLIP15.33■□□□□ 0.04
PDLIM5-213ENST00000509357 RAD54L2Q9Y4B4 1467 aa15.33■□□□□ 0.04
PDLIM5-213ENST00000509357 SYNJ1O43426 1573 aa15.32■□□□□ 0.04
PDLIM5-213ENST00000509357 FBLN2P98095 1184 aa15.3■□□□□ 0.04
PDLIM5-213ENST00000509357 FGD5Q6ZNL6 1462 aa15.3■□□□□ 0.04
PDLIM5-213ENST00000509357 TDRD9Q8NDG6 1382 aaKnown RBP15.3■□□□□ 0.04
PDLIM5-213ENST00000509357 TARBP1Q13395 1621 aaKnown RBP15.28■□□□□ 0.04
PDLIM5-213ENST00000509357 EIF4G3O43432 1585 aaKnown RBP15.28■□□□□ 0.04
PDLIM5-213ENST00000509357 TRIM41Q8WV44 630 aa15.27■□□□□ 0.04
PDLIM5-213ENST00000509357 BIVM-ERCC5R4GMW8 1640 aa15.27■□□□□ 0.03
PDLIM5-213ENST00000509357 TOP2BQ02880 1626 aa15.24■□□□□ 0.03
PDLIM5-213ENST00000509357 WRNQ14191 1432 aaPredicted RBP eCLIP15.22■□□□□ 0.03
PDLIM5-213ENST00000509357 WDR97A6NE52 1622 aa15.21■□□□□ 0.03
PDLIM5-213ENST00000509357 CHMP7Q8WUX9 453 aaPredicted RBP15.19■□□□□ 0.02
PDLIM5-213ENST00000509357 GRIN2BQ13224 1484 aa15.16■□□□□ 0.02
PDLIM5-213ENST00000509357 SNAPC4Q5SXM2 1469 aa15.15■□□□□ 0.02
PDLIM5-213ENST00000509357 GAPVD1Q14C86 1478 aa15.14■□□□□ 0.01
PDLIM5-213ENST00000509357 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
PDLIM5-213ENST00000509357 MAGI1Q96QZ7 1491 aaPredicted RBP15.11■□□□□ 0.01
PDLIM5-213ENST00000509357 CHD1O14646 1710 aa15.1■□□□□ 0.01
PDLIM5-213ENST00000509357 ABCA5Q8WWZ7 1642 aa15.08■□□□□ 0
PDLIM5-213ENST00000509357 SYNJ2O15056 1496 aa15.07■□□□□ 0
PDLIM5-213ENST00000509357 CYB5RLQ6IPT4 315 aa15.05■□□□□ -0
PDLIM5-213ENST00000509357 ARHGEF11O15085 1522 aa15.05■□□□□ -0
PDLIM5-213ENST00000509357 RIMBP3CA6NJZ7 1639 aa15.04■□□□□ -0
PDLIM5-213ENST00000509357 RIMBP3BA6NNM3 1639 aa15.04■□□□□ -0
PDLIM5-213ENST00000509357 RIMBP3Q9UFD9 1639 aa15.04■□□□□ -0
PDLIM5-213ENST00000509357 PBRM1Q86U86 1689 aa15.03■□□□□ -0
PDLIM5-213ENST00000509357 FHAD1B1AJZ9 1412 aa14.96□□□□□ -0.01
PDLIM5-213ENST00000509357 RUSC2Q8N2Y8 1516 aa14.96□□□□□ -0.02
PDLIM5-213ENST00000509357 CLASP1Q7Z460 1538 aa14.94□□□□□ -0.02
PDLIM5-213ENST00000509357 GRIN2AQ12879 1464 aa14.94□□□□□ -0.02
PDLIM5-213ENST00000509357 ERICH3Q5RHP9 1530 aa14.93□□□□□ -0.02
PDLIM5-213ENST00000509357 CHIC1Q5VXU3 224 aa14.92□□□□□ -0.02
PDLIM5-213ENST00000509357 ADAMTS12P58397 1594 aa14.92□□□□□ -0.02
PDLIM5-213ENST00000509357 ARAP1Q96P48 1450 aa14.91□□□□□ -0.02
PDLIM5-213ENST00000509357 KIF27Q86VH2 1401 aa14.91□□□□□ -0.02
PDLIM5-213ENST00000509357 NUP160Q12769 1436 aa14.86□□□□□ -0.03
PDLIM5-213ENST00000509357 TRHP20396 242 aaPredicted RBP14.86□□□□□ -0.03
PDLIM5-213ENST00000509357 IGF1RP08069 1367 aa14.85□□□□□ -0.03
PDLIM5-213ENST00000509357 CEP170Q5SW79 1584 aa14.84□□□□□ -0.03
PDLIM5-213ENST00000509357 JPH4Q96JJ6 628 aa14.81□□□□□ -0.04
PDLIM5-213ENST00000509357 CUL7Q14999 1698 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms