RNA–Protein interactions for RNA: ENST00000557572.1

FOXN3-217, Transcript of forkhead box N3, humanhuman

TSL 3

Gene FOXN3, Length 513 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-217ENST00000557572 AEBP2Q6ZN18 517 aaPredicted RBP30.08■■■□□ 2.41
FOXN3-217ENST00000557572 CHIC1Q5VXU3 224 aa28.13■■■□□ 2.09
FOXN3-217ENST00000557572 SENP3Q9H4L4 574 aaPredicted RBP25.78■■□□□ 1.72
FOXN3-217ENST00000557572 PHF23Q9BUL5 403 aaPredicted RBP25.37■■□□□ 1.65
FOXN3-217ENST00000557572 FOXD1Q16676 465 aa24.12■■□□□ 1.45
FOXN3-217ENST00000557572 POTEDQ86YR6 584 aa23.54■■□□□ 1.36
FOXN3-217ENST00000557572 MSH5O43196 834 aa22.85■■□□□ 1.25
FOXN3-217ENST00000557572 PIAS4Q8N2W9 510 aaPredicted RBP22.41■■□□□ 1.18
FOXN3-217ENST00000557572 PPP6R1Q9UPN7 881 aa22.02■■□□□ 1.12
FOXN3-217ENST00000557572 PLPPR3Q6T4P5 718 aa21.96■■□□□ 1.11
FOXN3-217ENST00000557572 ADRA2BP18089 450 aa21.94■■□□□ 1.1
FOXN3-217ENST00000557572 MAPK8IP2Q13387 824 aaPredicted RBP20.37■□□□□ 0.85
FOXN3-217ENST00000557572 DMRT2Q9Y5R5 561 aa20.31■□□□□ 0.84
FOXN3-217ENST00000557572 CACNB1Q02641 598 aaPredicted RBP20.12■□□□□ 0.81
FOXN3-217ENST00000557572 SCAF1Q9H7N4 1312 aaKnown RBP20.06■□□□□ 0.8
FOXN3-217ENST00000557572 DCAF8L1A6NGE4 600 aa19.67■□□□□ 0.74
FOXN3-217ENST00000557572 RNF39Q9H2S5 420 aa19.41■□□□□ 0.7
FOXN3-217ENST00000557572 HOXD11P31277 338 aaPredicted RBP19.25■□□□□ 0.67
FOXN3-217ENST00000557572 PPP4R3CPQ6ZMV5 832 aa19.17■□□□□ 0.66
FOXN3-217ENST00000557572 C1QBPQ07021 282 aaKnown RBP19.1■□□□□ 0.65
FOXN3-217ENST00000557572 CNKSR2Q8WXI2 1034 aa18.95■□□□□ 0.62
FOXN3-217ENST00000557572 RNF216Q9NWF9 866 aaPredicted RBP18.95■□□□□ 0.62
FOXN3-217ENST00000557572 DNAJC5BQ9UF47 199 aa18.68■□□□□ 0.58
FOXN3-217ENST00000557572 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.46■□□□□ 0.554e-6■□□□□ 11.1
FOXN3-217ENST00000557572 POTEHQ6S545 545 aa18.33■□□□□ 0.52
FOXN3-217ENST00000557572 NCBP3Q53F19 620 aaKnown RBP18.22■□□□□ 0.51
FOXN3-217ENST00000557572 CAPN15O75808 1086 aa17.97■□□□□ 0.47
FOXN3-217ENST00000557572 DSG3P32926 999 aa17.96■□□□□ 0.47
FOXN3-217ENST00000557572 NPM3O75607 178 aaKnown RBP17.94■□□□□ 0.46
FOXN3-217ENST00000557572 SPINK5Q9NQ38 1064 aaPredicted RBP17.92■□□□□ 0.46
FOXN3-217ENST00000557572 U3KPZ7 1027 aaPredicted RBP17.91■□□□□ 0.46
FOXN3-217ENST00000557572 TRHP20396 242 aaPredicted RBP17.52■□□□□ 0.4
FOXN3-217ENST00000557572 ABCB7O75027 752 aa17.49■□□□□ 0.39
FOXN3-217ENST00000557572 ZNF219Q9P2Y4 722 aaPredicted RBP17.39■□□□□ 0.37
FOXN3-217ENST00000557572 APLP2Q06481 763 aa17.37■□□□□ 0.37
FOXN3-217ENST00000557572 SLC4A2P04920 1241 aa17.29■□□□□ 0.36
FOXN3-217ENST00000557572 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.17■□□□□ 0.34
FOXN3-217ENST00000557572 HNRNPUL2Q1KMD3 747 aaKnown RBP17.17■□□□□ 0.34
FOXN3-217ENST00000557572 RBM42Q9BTD8 480 aaKnown RBP17.16■□□□□ 0.34
FOXN3-217ENST00000557572 CHRDL2Q6WN34 429 aa17.08■□□□□ 0.32
FOXN3-217ENST00000557572 SAMD1Q6SPF0 538 aaPredicted RBP17.04■□□□□ 0.32
FOXN3-217ENST00000557572 KCNA4P22459 653 aa16.97■□□□□ 0.31
FOXN3-217ENST00000557572 POLA2Q14181 598 aa16.84■□□□□ 0.29
FOXN3-217ENST00000557572 SP7Q8TDD2 431 aaPredicted RBP16.83■□□□□ 0.28
FOXN3-217ENST00000557572 MYCNP04198 464 aaPredicted RBP16.61■□□□□ 0.25
FOXN3-217ENST00000557572 AKT1S1Q96B36 256 aa16.61■□□□□ 0.25
FOXN3-217ENST00000557572 PIP4P2Q8N4L2 257 aa16.51■□□□□ 0.23
FOXN3-217ENST00000557572 HAX1O00165 279 aa16.49■□□□□ 0.23
FOXN3-217ENST00000557572 REM2Q8IYK8 340 aaPredicted RBP16.47■□□□□ 0.23
FOXN3-217ENST00000557572 ZBTB12Q9Y330 459 aaPredicted RBP16.4■□□□□ 0.22
FOXN3-217ENST00000557572 OSCARQ8IYS5 282 aa16.32■□□□□ 0.2
FOXN3-217ENST00000557572 PITPNM1O00562 1244 aa16.3■□□□□ 0.2
FOXN3-217ENST00000557572 ATF5Q9Y2D1 282 aaPredicted RBP16.3■□□□□ 0.2
FOXN3-217ENST00000557572 FXR2P51116 673 aaKnown RBP eCLIP16.27■□□□□ 0.24e-6■■□□□ 12.2
FOXN3-217ENST00000557572 EVX2Q03828 476 aa16.16■□□□□ 0.18
FOXN3-217ENST00000557572 FOXD4L1Q9NU39 408 aa16.04■□□□□ 0.16
FOXN3-217ENST00000557572 PRKAR2AP13861 404 aaKnown RBP15.91■□□□□ 0.14
FOXN3-217ENST00000557572 SLC4A1APQ9BWU0 796 aaKnown RBP15.89■□□□□ 0.13
FOXN3-217ENST00000557572 CLEC11AQ9Y240 323 aa15.85■□□□□ 0.13
FOXN3-217ENST00000557572 SPDYE2BA6NHP3 402 aa15.83■□□□□ 0.12
FOXN3-217ENST00000557572 SPDYE6P0CI01 402 aa15.83■□□□□ 0.12
FOXN3-217ENST00000557572 SPDYE2Q495Y8 402 aa15.83■□□□□ 0.12
FOXN3-217ENST00000557572 LHX8Q68G74 356 aa15.8■□□□□ 0.12
FOXN3-217ENST00000557572 C19orf67A6NJJ6 358 aa15.78■□□□□ 0.12
FOXN3-217ENST00000557572 GABBR2O75899 941 aa15.76■□□□□ 0.11
FOXN3-217ENST00000557572 SPDYE1Q8NFV5 336 aaPredicted RBP15.76■□□□□ 0.11
FOXN3-217ENST00000557572 FBLN2P98095 1184 aa15.74■□□□□ 0.11
FOXN3-217ENST00000557572 CHADLQ6NUI6 762 aa15.6■□□□□ 0.09
FOXN3-217ENST00000557572 ATXN8OSP0DMR3 200 aa15.59■□□□□ 0.09
FOXN3-217ENST00000557572 ZNF692Q9BU19 519 aaPredicted RBP15.59■□□□□ 0.09
FOXN3-217ENST00000557572 ZBTB22O15209 634 aa15.55■□□□□ 0.08
FOXN3-217ENST00000557572 SSUH2Q9Y2M2 353 aa15.5■□□□□ 0.07
FOXN3-217ENST00000557572 MKRN4PQ13434 485 aaPredicted RBP15.48■□□□□ 0.07
FOXN3-217ENST00000557572 PLSCR2Q9NRY7 297 aa15.47■□□□□ 0.07
FOXN3-217ENST00000557572 PRR29P0C7W0 189 aa15.45■□□□□ 0.06
FOXN3-217ENST00000557572 POTEIP0CG38 1075 aa15.4■□□□□ 0.06
FOXN3-217ENST00000557572 CD44P16070 742 aaKnown RBP15.35■□□□□ 0.05
FOXN3-217ENST00000557572 PABPN1Q86U42 306 aaKnown RBP eCLIP15.32■□□□□ 0.04
FOXN3-217ENST00000557572 DCBLD2Q96PD2 775 aa15.24■□□□□ 0.03
FOXN3-217ENST00000557572 FARP1Q9Y4F1 1045 aaPredicted RBP15.24■□□□□ 0.03
FOXN3-217ENST00000557572 CLCN6P51797 869 aa15.22■□□□□ 0.03
FOXN3-217ENST00000557572 ZRANB1Q9UGI0 708 aa15.04■□□□□ -0
FOXN3-217ENST00000557572 ZNF579Q8NAF0 562 aaKnown RBP15.02■□□□□ -0
FOXN3-217ENST00000557572 OTUD5Q96G74 571 aa14.99□□□□□ -0.01
FOXN3-217ENST00000557572 GALR2O43603 387 aaPredicted RBP14.94□□□□□ -0.02
FOXN3-217ENST00000557572 POTEMA6NI47 508 aa14.92□□□□□ -0.02
FOXN3-217ENST00000557572 POTEB2H3BUK9 544 aa14.9□□□□□ -0.02
FOXN3-217ENST00000557572 POTEGQ6S5H5 508 aa14.85□□□□□ -0.03
FOXN3-217ENST00000557572 CREBZFQ9NS37 354 aa14.84□□□□□ -0.03
FOXN3-217ENST00000557572 PAK3O75914 559 aaPredicted RBP14.77□□□□□ -0.05
FOXN3-217ENST00000557572 PHF12Q96QT6 1004 aa14.75□□□□□ -0.05
FOXN3-217ENST00000557572 STAG3Q9UJ98 1225 aa14.73□□□□□ -0.05
FOXN3-217ENST00000557572 PELP1Q8IZL8 1130 aaKnown RBP14.7□□□□□ -0.06
FOXN3-217ENST00000557572 PCDH10Q9P2E7 1040 aa14.67□□□□□ -0.06
FOXN3-217ENST00000557572 METRNQ9UJH8 293 aa14.61□□□□□ -0.07
FOXN3-217ENST00000557572 NPM1P06748 294 aaKnown RBP eCLIP14.58□□□□□ -0.08
FOXN3-217ENST00000557572 POTEJP0CG39 1038 aa14.55□□□□□ -0.08
FOXN3-217ENST00000557572 SLC39A7Q92504 469 aa14.55□□□□□ -0.08
FOXN3-217ENST00000557572 C7P10643 843 aa14.54□□□□□ -0.08
FOXN3-217ENST00000557572 ASTLQ6HA08 431 aaPredicted RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms