RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, humanhuman

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD9-208ENST00000489816 NISCHQ9Y2I1 1504 aa32.32■■■□□ 2.76
BRD9-208ENST00000489816 SHROOM4Q9ULL8 1493 aa28.26■■■□□ 2.11
BRD9-208ENST00000489816 DCAF8L2P0C7V8 631 aa27.77■■■□□ 2.04
BRD9-208ENST00000489816 SUPT5HO00267 1087 aaKnown RBP27.7■■■□□ 2.03
BRD9-208ENST00000489816 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
BRD9-208ENST00000489816 CCDC180Q9P1Z9 1646 aa27.14■■□□□ 1.94
BRD9-208ENST00000489816 CHIC1Q5VXU3 224 aa26.57■■□□□ 1.84
BRD9-208ENST00000489816 MYO15BQ96JP2 1530 aa26.4■■□□□ 1.82
BRD9-208ENST00000489816 DCAF1Q9Y4B6 1507 aa26.16■■□□□ 1.78
BRD9-208ENST00000489816 LOC105371045A0A1W2PR82 267 aa26.09■■□□□ 1.77
BRD9-208ENST00000489816 SCRIBQ14160 1630 aa25.99■■□□□ 1.75
BRD9-208ENST00000489816 ABCC9O60706 1549 aa25.97■■□□□ 1.75
BRD9-208ENST00000489816 PCGF6Q9BYE7 350 aa25.95■■□□□ 1.75
BRD9-208ENST00000489816 EHMT2Q96KQ7 1210 aa25.8■■□□□ 1.72
BRD9-208ENST00000489816 FAM9AQ8IZU1 332 aaPredicted RBP25.73■■□□□ 1.71
BRD9-208ENST00000489816 RSF1Q96T23 1441 aaPredicted RBP25.7■■□□□ 1.7
BRD9-208ENST00000489816 TRIM41Q8WV44 630 aa25.59■■□□□ 1.69
BRD9-208ENST00000489816 HRCP23327 699 aa25.57■■□□□ 1.68
BRD9-208ENST00000489816 CECR2Q9BXF3 1484 aa25.5■■□□□ 1.67
BRD9-208ENST00000489816 PPARGC1BQ86YN6 1023 aaKnown RBP25.48■■□□□ 1.67
BRD9-208ENST00000489816 RB1CC1Q8TDY2 1594 aa25.43■■□□□ 1.66
BRD9-208ENST00000489816 MROH2BQ7Z745 1585 aa25.29■■□□□ 1.64
BRD9-208ENST00000489816 NACADO15069 1562 aa25.28■■□□□ 1.64
BRD9-208ENST00000489816 TRIM26Q12899 539 aaPredicted RBP25.14■■□□□ 1.61
BRD9-208ENST00000489816 WIZO95785 1651 aa25.13■■□□□ 1.61
BRD9-208ENST00000489816 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
BRD9-208ENST00000489816 TTBK1Q5TCY1 1321 aaPredicted RBP24.87■■□□□ 1.57
BRD9-208ENST00000489816 BAZ1AQ9NRL2 1556 aaPredicted RBP24.77■■□□□ 1.56
BRD9-208ENST00000489816 ABCC8Q09428 1581 aa24.7■■□□□ 1.54
BRD9-208ENST00000489816 CCDC88BA6NC98 1476 aa24.65■■□□□ 1.54
BRD9-208ENST00000489816 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
BRD9-208ENST00000489816 UNC13AQ9UPW8 1703 aa24.58■■□□□ 1.53
BRD9-208ENST00000489816 TOP2AP11388 1531 aaKnown RBP24.52■■□□□ 1.52
BRD9-208ENST00000489816 SOGA1O94964 1423 aa24.5■■□□□ 1.51
BRD9-208ENST00000489816 UBTFP17480 764 aaKnown RBP24.5■■□□□ 1.51
BRD9-208ENST00000489816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.49■■□□□ 1.51
BRD9-208ENST00000489816 SMARCA2P51531 1590 aa24.46■■□□□ 1.51
BRD9-208ENST00000489816 EIF4G1Q04637 1599 aaKnown RBP24.42■■□□□ 1.5
BRD9-208ENST00000489816 RUSC2Q8N2Y8 1516 aa24.41■■□□□ 1.5
BRD9-208ENST00000489816 RANGAP1P46060 587 aaPredicted RBP24.41■■□□□ 1.5
BRD9-208ENST00000489816 ZEB1P37275 1124 aaPredicted RBP24.37■■□□□ 1.49
BRD9-208ENST00000489816 BICRAQ9NZM4 1560 aa24.36■■□□□ 1.49
BRD9-208ENST00000489816 CSRNP3Q8WYN3 585 aa24.35■■□□□ 1.49
BRD9-208ENST00000489816 CCER1Q8TC90 406 aaPredicted RBP24.33■■□□□ 1.48
BRD9-208ENST00000489816 CEP162Q5TB80 1403 aa24.24■■□□□ 1.47
BRD9-208ENST00000489816 WRNQ14191 1432 aaPredicted RBP eCLIP24.17■■□□□ 1.467e-9■■□□□ 11.4
BRD9-208ENST00000489816 ATAD2BQ9ULI0 1458 aa24.09■■□□□ 1.45
BRD9-208ENST00000489816 TNIKQ9UKE5 1360 aa24.07■■□□□ 1.44
BRD9-208ENST00000489816 BAZ1BQ9UIG0 1483 aaKnown RBP24.07■■□□□ 1.44
BRD9-208ENST00000489816 HNRNPUL2Q1KMD3 747 aaKnown RBP24■■□□□ 1.43
BRD9-208ENST00000489816 SYNJ1O43426 1573 aa23.99■■□□□ 1.43
BRD9-208ENST00000489816 GOLGA3Q08378 1498 aa23.94■■□□□ 1.42
BRD9-208ENST00000489816 EEA1Q15075 1411 aa23.92■■□□□ 1.42
BRD9-208ENST00000489816 PEG3Q9GZU2 1588 aa23.88■■□□□ 1.41
BRD9-208ENST00000489816 APLP2Q06481 763 aa23.83■■□□□ 1.41
BRD9-208ENST00000489816 RAPGEF2Q9Y4G8 1499 aa23.82■■□□□ 1.4
BRD9-208ENST00000489816 CLIP1P30622 1438 aa23.82■■□□□ 1.4
BRD9-208ENST00000489816 CEP164Q9UPV0 1460 aa23.78■■□□□ 1.4
BRD9-208ENST00000489816 DIEXFQ68CQ4 756 aaKnown RBP23.71■■□□□ 1.39
BRD9-208ENST00000489816 SCAF1Q9H7N4 1312 aaKnown RBP23.66■■□□□ 1.38
BRD9-208ENST00000489816 VPS8Q8N3P4 1428 aa23.58■■□□□ 1.37
BRD9-208ENST00000489816 KIF21BO75037 1637 aa23.57■■□□□ 1.36
BRD9-208ENST00000489816 KANK4Q5T7N3 995 aaPredicted RBP23.55■■□□□ 1.36
BRD9-208ENST00000489816 TOP2BQ02880 1626 aa23.53■■□□□ 1.36
BRD9-208ENST00000489816 ITGAEP38570 1179 aa23.53■■□□□ 1.36
BRD9-208ENST00000489816 NCAPD3P42695 1498 aa23.52■■□□□ 1.36
BRD9-208ENST00000489816 NEUROD1Q13562 356 aa23.5■■□□□ 1.35
BRD9-208ENST00000489816 CUX1P39880 1505 aa23.49■■□□□ 1.35
BRD9-208ENST00000489816 YTHDC1Q96MU7 727 aaKnown RBP23.48■■□□□ 1.35
BRD9-208ENST00000489816 ZNF316A6NFI3 1004 aaPredicted RBP23.45■■□□□ 1.34
BRD9-208ENST00000489816 P3H3Q8IVL6 736 aa23.41■■□□□ 1.34
BRD9-208ENST00000489816 ATP1B4Q9UN42 357 aaPredicted RBP23.4■■□□□ 1.34
BRD9-208ENST00000489816 KIF27Q86VH2 1401 aa23.4■■□□□ 1.34
BRD9-208ENST00000489816 PRXQ9BXM0 1461 aa23.38■■□□□ 1.33
BRD9-208ENST00000489816 CFTRP13569 1480 aa23.36■■□□□ 1.33
BRD9-208ENST00000489816 HMGXB3Q12766 1538 aa23.36■■□□□ 1.33
BRD9-208ENST00000489816 ACIN1Q9UKV3 1341 aaKnown RBP23.36■■□□□ 1.33
BRD9-208ENST00000489816 ARAP1Q96P48 1450 aa23.35■■□□□ 1.33
BRD9-208ENST00000489816 BIVM-ERCC5R4GMW8 1640 aa23.34■■□□□ 1.33
BRD9-208ENST00000489816 CUX2O14529 1486 aa23.31■■□□□ 1.32
BRD9-208ENST00000489816 MIER1Q8N108 512 aa23.28■■□□□ 1.32
BRD9-208ENST00000489816 GTF3C3Q9Y5Q9 886 aa23.26■■□□□ 1.31
BRD9-208ENST00000489816 CADPSQ9ULU8 1353 aa23.24■■□□□ 1.31
BRD9-208ENST00000489816 IGF1RP08069 1367 aa23.22■■□□□ 1.31
BRD9-208ENST00000489816 CENPBP07199 599 aaPredicted RBP23.21■■□□□ 1.31
BRD9-208ENST00000489816 ERICH3Q5RHP9 1530 aa23.2■■□□□ 1.3
BRD9-208ENST00000489816 ARHGAP35Q9NRY4 1499 aa23.18■■□□□ 1.3
BRD9-208ENST00000489816 CARMIL1Q5VZK9 1371 aa23.16■■□□□ 1.3
BRD9-208ENST00000489816 FGD5Q6ZNL6 1462 aa23.14■■□□□ 1.3
BRD9-208ENST00000489816 DNAJC5BQ9UF47 199 aa23.13■■□□□ 1.29
BRD9-208ENST00000489816 FAM50AQ14320 339 aaKnown RBP23.11■■□□□ 1.29
BRD9-208ENST00000489816 DHX57Q6P158 1386 aaKnown RBP23.1■■□□□ 1.29
BRD9-208ENST00000489816 NESP48681 1621 aa23.09■■□□□ 1.29
BRD9-208ENST00000489816 CC2D2AQ9P2K1 1620 aa23.09■■□□□ 1.29
BRD9-208ENST00000489816 RAD54L2Q9Y4B4 1467 aa23.08■■□□□ 1.29
BRD9-208ENST00000489816 CCNB3Q8WWL7 1395 aa23.05■■□□□ 1.28
BRD9-208ENST00000489816 FANCD2Q9BXW9 1451 aa23.03■■□□□ 1.28
BRD9-208ENST00000489816 RRBP1Q9P2E9 1410 aaKnown RBP22.93■■□□□ 1.26
BRD9-208ENST00000489816 FHOD3Q2V2M9 1422 aa22.93■■□□□ 1.26
BRD9-208ENST00000489816 TDRD9Q8NDG6 1382 aaKnown RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms