Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
COL17A1Q9UMD9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
COL17A1Q9UMD9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
COL17A1Q9UMD9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC35.16■■■■□ 3.22
COL17A1Q9UMD9 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
COL17A1Q9UMD9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
COL17A1Q9UMD9 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC35.16■■■■□ 3.22
COL17A1Q9UMD9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
COL17A1Q9UMD9 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
COL17A1Q9UMD9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
COL17A1Q9UMD9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC35.15■■■■□ 3.22
COL17A1Q9UMD9 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC35.15■■■■□ 3.22
COL17A1Q9UMD9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC35.15■■■■□ 3.22
COL17A1Q9UMD9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
COL17A1Q9UMD9 AL354811.1-201ENST00000610286 706 ntBASIC35.15■■■■□ 3.22
COL17A1Q9UMD9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC35.14■■■■□ 3.22
COL17A1Q9UMD9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC35.14■■■■□ 3.22
COL17A1Q9UMD9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
COL17A1Q9UMD9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC35.14■■■■□ 3.22
COL17A1Q9UMD9 IGHV3-19-201ENST00000521488 291 ntBASIC35.14■■■■□ 3.22
COL17A1Q9UMD9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC35.14■■■■□ 3.22
COL17A1Q9UMD9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC35.14■■■■□ 3.22
COL17A1Q9UMD9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.22
COL17A1Q9UMD9 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 CROCCP5-201ENST00000436658 830 ntBASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 AC009086.3-201ENST00000623486 1008 ntBASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC35.13■■■■□ 3.21
COL17A1Q9UMD9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 AC131274.2-201ENST00000580697 1507 ntBASIC35.12■■■■□ 3.21
COL17A1Q9UMD9 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC35.11■■■■□ 3.21
COL17A1Q9UMD9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC35.11■■■■□ 3.21
COL17A1Q9UMD9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC35.11■■■■□ 3.21
COL17A1Q9UMD9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
COL17A1Q9UMD9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC35.11■■■■□ 3.21
COL17A1Q9UMD9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
COL17A1Q9UMD9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
COL17A1Q9UMD9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
COL17A1Q9UMD9 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC35.1■■■■□ 3.21
COL17A1Q9UMD9 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC35.1■■■■□ 3.21
COL17A1Q9UMD9 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
COL17A1Q9UMD9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC35.1■■■■□ 3.21
COL17A1Q9UMD9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 TSPY20P-201ENST00000450910 630 ntBASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 AL109923.1-201ENST00000618799 583 ntBASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
COL17A1Q9UMD9 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
COL17A1Q9UMD9 AC026185.1-201ENST00000445748 174 ntBASIC35.08■■■■□ 3.21
COL17A1Q9UMD9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC35.08■■■■□ 3.21
COL17A1Q9UMD9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC35.07■■■■□ 3.21
COL17A1Q9UMD9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC35.07■■■■□ 3.2
COL17A1Q9UMD9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC35.07■■■■□ 3.2
COL17A1Q9UMD9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC35.07■■■■□ 3.2
COL17A1Q9UMD9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC35.06■■■■□ 3.2
COL17A1Q9UMD9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC35.06■■■■□ 3.2
COL17A1Q9UMD9 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC35.06■■■■□ 3.2
COL17A1Q9UMD9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
COL17A1Q9UMD9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC35.05■■■■□ 3.2
COL17A1Q9UMD9 LINC02228-203ENST00000641970 1355 ntBASIC35.05■■■■□ 3.2
COL17A1Q9UMD9 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
COL17A1Q9UMD9 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC35.04■■■■□ 3.2
COL17A1Q9UMD9 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC35.04■■■■□ 3.2
COL17A1Q9UMD9 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC35.04■■■■□ 3.2
COL17A1Q9UMD9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC35.04■■■■□ 3.2
COL17A1Q9UMD9 CD99P1-205ENST00000527459 561 ntBASIC35.04■■■■□ 3.2
COL17A1Q9UMD9 AL499627.2-201ENST00000606283 725 ntBASIC35.04■■■■□ 3.2
COL17A1Q9UMD9 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
COL17A1Q9UMD9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
COL17A1Q9UMD9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC35.02■■■■□ 3.2
COL17A1Q9UMD9 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC35.02■■■■□ 3.2
COL17A1Q9UMD9 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
COL17A1Q9UMD9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC35.02■■■■□ 3.2
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms