RNA–Protein interactions for RNA: ENST00000252486.8

APOE-201, Transcript of apolipoprotein E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene APOE, Length 1,208 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOE-201ENST00000252486 NISCHQ9Y2I1 1504 aa54.33■■■■■ 6.29
APOE-201ENST00000252486 CCDC180Q9P1Z9 1646 aa48.1■■■■■ 5.29
APOE-201ENST00000252486 ABCC9O60706 1549 aa46.42■■■■■ 5.02
APOE-201ENST00000252486 ZCCHC6Q5VYS8 1495 aaKnown RBP45.37■■■■■ 4.85
APOE-201ENST00000252486 DCAF8L2P0C7V8 631 aa45.11■■■■■ 4.81
APOE-201ENST00000252486 NACADO15069 1562 aa45.1■■■■■ 4.81
APOE-201ENST00000252486 MYO15BQ96JP2 1530 aa45.05■■■■■ 4.8
APOE-201ENST00000252486 DCAF1Q9Y4B6 1507 aa45.05■■■■■ 4.8
APOE-201ENST00000252486 RB1CC1Q8TDY2 1594 aa45■■■■■ 4.79
APOE-201ENST00000252486 UNC13AQ9UPW8 1703 aa43.9■■■■■ 4.62
APOE-201ENST00000252486 SCRIBQ14160 1630 aa43.85■■■■■ 4.61
APOE-201ENST00000252486 BICRAQ9NZM4 1560 aa43.54■■■■■ 4.56
APOE-201ENST00000252486 PABPN1Q86U42 306 aaKnown RBP eCLIP43.44■■■■■ 4.54
APOE-201ENST00000252486 SHROOM4Q9ULL8 1493 aa43.28■■■■■ 4.52
APOE-201ENST00000252486 EIF4G1Q04637 1599 aaKnown RBP42.37■■■■■ 4.37
APOE-201ENST00000252486 CECR2Q9BXF3 1484 aa42.18■■■■■ 4.34
APOE-201ENST00000252486 BAZ1AQ9NRL2 1556 aaPredicted RBP42.11■■■■■ 4.33
APOE-201ENST00000252486 CC2D2AQ9P2K1 1620 aa42.05■■■■■ 4.32
APOE-201ENST00000252486 SMARCA4P51532 1647 aa42.03■■■■■ 4.32
APOE-201ENST00000252486 DNAJC5BQ9UF47 199 aa42.02■■■■■ 4.32
APOE-201ENST00000252486 MROH2BQ7Z745 1585 aa41.84■■■■■ 4.29
APOE-201ENST00000252486 SMARCA2P51531 1590 aa41.7■■■■■ 4.27
APOE-201ENST00000252486 ATAD2BQ9ULI0 1458 aa41.66■■■■■ 4.26
APOE-201ENST00000252486 PEG3Q9GZU2 1588 aa41.64■■■■■ 4.26
APOE-201ENST00000252486 RSF1Q96T23 1441 aaPredicted RBP41.59■■■■■ 4.25
APOE-201ENST00000252486 NCAPD3P42695 1498 aa41.58■■■■■ 4.25
APOE-201ENST00000252486 HMGXB3Q12766 1538 aa41.44■■■■■ 4.23
APOE-201ENST00000252486 WIZO95785 1651 aa41.41■■■■■ 4.22
APOE-201ENST00000252486 BAZ1BQ9UIG0 1483 aaKnown RBP41.36■■■■■ 4.21
APOE-201ENST00000252486 TOP2AP11388 1531 aaKnown RBP41.07■■■■■ 4.16
APOE-201ENST00000252486 SUPT5HO00267 1087 aaKnown RBP40.92■■■■■ 4.14
APOE-201ENST00000252486 CCDC88BA6NC98 1476 aa40.54■■■■■ 4.08
APOE-201ENST00000252486 LAMC3Q9Y6N6 1575 aa40.42■■■■■ 4.06
APOE-201ENST00000252486 CADPSQ9ULU8 1353 aa40.39■■■■■ 4.06
APOE-201ENST00000252486 NESP48681 1621 aa40.31■■■■■ 4.04
APOE-201ENST00000252486 CFTRP13569 1480 aa40.27■■■■■ 4.04
APOE-201ENST00000252486 PDS5BQ9NTI5 1447 aa40.14■■■■■ 4.02
APOE-201ENST00000252486 PRDM2Q13029 1718 aa40.03■■■■■ 4
APOE-201ENST00000252486 ERCC6Q03468 1493 aa40.03■■■■■ 4
APOE-201ENST00000252486 FANCD2Q9BXW9 1451 aa39.91■■■■□ 3.98
APOE-201ENST00000252486 KIF21AQ7Z4S6 1674 aa39.89■■■■□ 3.98
APOE-201ENST00000252486 CEP164Q9UPV0 1460 aa39.84■■■■□ 3.97
APOE-201ENST00000252486 MRC2Q9UBG0 1479 aa39.66■■■■□ 3.94
APOE-201ENST00000252486 THOC2Q8NI27 1593 aaKnown RBP39.63■■■■□ 3.94
APOE-201ENST00000252486 WDR62O43379 1518 aa39.5■■■■□ 3.91
APOE-201ENST00000252486 ABCC8Q09428 1581 aa39.46■■■■□ 3.91
APOE-201ENST00000252486 URB2Q14146 1524 aaKnown RBP39.45■■■■□ 3.91
APOE-201ENST00000252486 CUX2O14529 1486 aa39.44■■■■□ 3.9
APOE-201ENST00000252486 DNMBPQ6XZF7 1577 aa39.36■■■■□ 3.89
APOE-201ENST00000252486 TOPBP1Q92547 1522 aa39.34■■■■□ 3.89
APOE-201ENST00000252486 CUX1P39880 1505 aa39.23■■■■□ 3.87
APOE-201ENST00000252486 WRNQ14191 1432 aaPredicted RBP eCLIP39.23■■■■□ 3.871e-6■■■□□ 15.2
APOE-201ENST00000252486 TOP2BQ02880 1626 aa39.07■■■■□ 3.85
APOE-201ENST00000252486 BIVM-ERCC5R4GMW8 1640 aa39.07■■■■□ 3.85
APOE-201ENST00000252486 SYNJ1O43426 1573 aa39.04■■■■□ 3.84
APOE-201ENST00000252486 POLA1P09884 1462 aaPredicted RBP39.03■■■■□ 3.84
APOE-201ENST00000252486 FGD5Q6ZNL6 1462 aa39.02■■■■□ 3.84
APOE-201ENST00000252486 IFT140Q96RY7 1462 aa38.99■■■■□ 3.83
APOE-201ENST00000252486 SOGA1O94964 1423 aa38.9■■■■□ 3.82
APOE-201ENST00000252486 TARBP1Q13395 1621 aaKnown RBP38.85■■■■□ 3.81
APOE-201ENST00000252486 RAD54L2Q9Y4B4 1467 aa38.81■■■■□ 3.8
APOE-201ENST00000252486 ABCA10Q8WWZ4 1543 aa38.7■■■■□ 3.79
APOE-201ENST00000252486 WDR97A6NE52 1622 aa38.69■■■■□ 3.78
APOE-201ENST00000252486 TRIM41Q8WV44 630 aa38.68■■■■□ 3.78
APOE-201ENST00000252486 ZNF608Q9ULD9 1512 aaPredicted RBP38.67■■■■□ 3.78
APOE-201ENST00000252486 EIF4G3O43432 1585 aaKnown RBP38.59■■■■□ 3.77
APOE-201ENST00000252486 TDRD9Q8NDG6 1382 aaKnown RBP38.57■■■■□ 3.76
APOE-201ENST00000252486 AQRO60306 1485 aaKnown RBP eCLIP38.54■■■■□ 3.762e-8■■■□□ 17.8
APOE-201ENST00000252486 CHIC1Q5VXU3 224 aa38.53■■■■□ 3.76
APOE-201ENST00000252486 ABCA5Q8WWZ7 1642 aa38.48■■■■□ 3.75
APOE-201ENST00000252486 GAPVD1Q14C86 1478 aa38.47■■■■□ 3.75
APOE-201ENST00000252486 GRIN2BQ13224 1484 aa38.41■■■■□ 3.74
APOE-201ENST00000252486 KIF27Q86VH2 1401 aa38.39■■■■□ 3.74
APOE-201ENST00000252486 PBRM1Q86U86 1689 aa38.33■■■■□ 3.73
APOE-201ENST00000252486 ERICH3Q5RHP9 1530 aa38.28■■■■□ 3.72
APOE-201ENST00000252486 MAGI1Q96QZ7 1491 aaPredicted RBP38.26■■■■□ 3.72
APOE-201ENST00000252486 SNAPC4Q5SXM2 1469 aa38.23■■■■□ 3.71
APOE-201ENST00000252486 IGF1RP08069 1367 aa38.11■■■■□ 3.69
APOE-201ENST00000252486 EEA1Q15075 1411 aa38.09■■■■□ 3.69
APOE-201ENST00000252486 RUSC2Q8N2Y8 1516 aa38.08■■■■□ 3.69
APOE-201ENST00000252486 SYNJ2O15056 1496 aa38.08■■■■□ 3.69
APOE-201ENST00000252486 ADAMTS12P58397 1594 aa38.07■■■■□ 3.69
APOE-201ENST00000252486 FHAD1B1AJZ9 1412 aa38.07■■■■□ 3.69
APOE-201ENST00000252486 CUL7Q14999 1698 aa38.04■■■■□ 3.68
APOE-201ENST00000252486 CHMP7Q8WUX9 453 aaPredicted RBP38.02■■■■□ 3.68
APOE-201ENST00000252486 CHD1O14646 1710 aa37.98■■■■□ 3.67
APOE-201ENST00000252486 FBLN2P98095 1184 aa37.98■■■■□ 3.67
APOE-201ENST00000252486 CARMIL1Q5VZK9 1371 aa37.93■■■■□ 3.66
APOE-201ENST00000252486 OSCARQ8IYS5 282 aa37.89■■■■□ 3.66
APOE-201ENST00000252486 GRIN2AQ12879 1464 aa37.89■■■■□ 3.66
APOE-201ENST00000252486 CSRNP3Q8WYN3 585 aa37.88■■■■□ 3.65
APOE-201ENST00000252486 FAM9AQ8IZU1 332 aaPredicted RBP37.78■■■■□ 3.64
APOE-201ENST00000252486 RAPGEF2Q9Y4G8 1499 aa37.77■■■■□ 3.64
APOE-201ENST00000252486 PRXQ9BXM0 1461 aa37.76■■■■□ 3.63
APOE-201ENST00000252486 NUP160Q12769 1436 aa37.7■■■■□ 3.63
APOE-201ENST00000252486 CEP170Q5SW79 1584 aa37.63■■■■□ 3.62
APOE-201ENST00000252486 CLASP1Q7Z460 1538 aa37.61■■■■□ 3.61
APOE-201ENST00000252486 KIF21BO75037 1637 aa37.58■■■■□ 3.61
APOE-201ENST00000252486 DNAJC5Q9H3Z4 198 aa37.52■■■■□ 3.6
APOE-201ENST00000252486 KIAA0586Q9BVV6 1533 aa37.5■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms