Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
CCDC61Q9Y6R9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 SYT6-210ENST00000641643 1587 ntBASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 AC092171.4-201ENST00000609130 632 ntBASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 DUSP8P4-201ENST00000399538 1761 ntBASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC61Q9Y6R9 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC61Q9Y6R9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC61Q9Y6R9 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC61Q9Y6R9 AP001330.3-201ENST00000520123 633 ntBASIC31.82■■■□□ 2.68
CCDC61Q9Y6R9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC31.82■■■□□ 2.68
CCDC61Q9Y6R9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC61Q9Y6R9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC31.82■■■□□ 2.68
CCDC61Q9Y6R9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC61Q9Y6R9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC61Q9Y6R9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC61Q9Y6R9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
CCDC61Q9Y6R9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC31.81■■■□□ 2.68
CCDC61Q9Y6R9 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC61Q9Y6R9 AC105265.2-201ENST00000467189 838 ntBASIC31.8■■■□□ 2.68
CCDC61Q9Y6R9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC31.8■■■□□ 2.68
CCDC61Q9Y6R9 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC61Q9Y6R9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC31.8■■■□□ 2.68
CCDC61Q9Y6R9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC61Q9Y6R9 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC61Q9Y6R9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC61Q9Y6R9 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC31.79■■■□□ 2.68
CCDC61Q9Y6R9 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC61Q9Y6R9 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC61Q9Y6R9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC31.78■■■□□ 2.68
CCDC61Q9Y6R9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 SERBP1P1-201ENST00000396021 1160 ntBASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 AC009102.2-201ENST00000606772 1639 ntBASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CCDC61Q9Y6R9 AL022069.1-201ENST00000568025 1636 ntBASIC31.76■■■□□ 2.67
CCDC61Q9Y6R9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC31.76■■■□□ 2.67
CCDC61Q9Y6R9 MIR4767-201ENST00000582827 78 ntBASIC31.76■■■□□ 2.67
CCDC61Q9Y6R9 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC61Q9Y6R9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC61Q9Y6R9 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC61Q9Y6R9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.76■■■□□ 2.67
CCDC61Q9Y6R9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.75■■■□□ 2.67
CCDC61Q9Y6R9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC61Q9Y6R9 AC091305.1-201ENST00000479476 895 ntBASIC31.75■■■□□ 2.67
CCDC61Q9Y6R9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC31.75■■■□□ 2.67
CCDC61Q9Y6R9 AC099791.2-201ENST00000605725 427 ntBASIC31.75■■■□□ 2.67
CCDC61Q9Y6R9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
CCDC61Q9Y6R9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CCDC61Q9Y6R9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC31.74■■■□□ 2.67
CCDC61Q9Y6R9 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CCDC61Q9Y6R9 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC31.73■■■□□ 2.67
CCDC61Q9Y6R9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC31.73■■■□□ 2.67
CCDC61Q9Y6R9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC61Q9Y6R9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC61Q9Y6R9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC61Q9Y6R9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC31.72■■■□□ 2.67
CCDC61Q9Y6R9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC61Q9Y6R9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC31.71■■■□□ 2.67
CCDC61Q9Y6R9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC31.71■■■□□ 2.67
CCDC61Q9Y6R9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
CCDC61Q9Y6R9 CEBPA-AS1-201ENST00000592982 2198 ntBASIC31.7■■■□□ 2.67
CCDC61Q9Y6R9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC31.7■■■□□ 2.67
CCDC61Q9Y6R9 AL138724.1-201ENST00000606771 1088 ntBASIC31.7■■■□□ 2.67
CCDC61Q9Y6R9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC61Q9Y6R9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC61Q9Y6R9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
CCDC61Q9Y6R9 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.69■■■□□ 2.66
CCDC61Q9Y6R9 AC011298.3-201ENST00000615796 283 ntBASIC31.69■■■□□ 2.66
CCDC61Q9Y6R9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
CCDC61Q9Y6R9 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CCDC61Q9Y6R9 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC31.69■■■□□ 2.66
CCDC61Q9Y6R9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CCDC61Q9Y6R9 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 MAG-206ENST00000597035 542 ntTSL 4 BASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 AC092666.2-201ENST00000613287 246 ntBASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 C17orf82-201ENST00000623772 1530 ntBASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
CCDC61Q9Y6R9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CCDC61Q9Y6R9 RASA4CP-201ENST00000424092 1398 ntBASIC31.67■■■□□ 2.66
CCDC61Q9Y6R9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC31.66■■■□□ 2.66
CCDC61Q9Y6R9 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms