RNA–Protein interactions for RNA: ENST00000600911.5

IRF3-227, Transcript of interferon regulatory factor 3, humanhuman

TSL 5 BASIC

Gene IRF3, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IRF3-227ENST00000600911 NISCHQ9Y2I1 1504 aa54.14■■■■■ 6.26
IRF3-227ENST00000600911 CCDC180Q9P1Z9 1646 aa47.62■■■■■ 5.21
IRF3-227ENST00000600911 ABCC9O60706 1549 aa45.79■■■■■ 4.92
IRF3-227ENST00000600911 ZCCHC6Q5VYS8 1495 aaKnown RBP45.33■■■■■ 4.85
IRF3-227ENST00000600911 DCAF8L2P0C7V8 631 aa44.83■■■■■ 4.77
IRF3-227ENST00000600911 DCAF1Q9Y4B6 1507 aa44.71■■■■■ 4.75
IRF3-227ENST00000600911 NACADO15069 1562 aa44.49■■■■■ 4.71
IRF3-227ENST00000600911 MYO15BQ96JP2 1530 aa44.48■■■■■ 4.71
IRF3-227ENST00000600911 RB1CC1Q8TDY2 1594 aa44.32■■■■■ 4.68
IRF3-227ENST00000600911 SCRIBQ14160 1630 aa43.72■■■■■ 4.59
IRF3-227ENST00000600911 UNC13AQ9UPW8 1703 aa43.62■■■■■ 4.57
IRF3-227ENST00000600911 SHROOM4Q9ULL8 1493 aa43.56■■■■■ 4.56
IRF3-227ENST00000600911 BICRAQ9NZM4 1560 aa43.15■■■■■ 4.5
IRF3-227ENST00000600911 PABPN1Q86U42 306 aaKnown RBP eCLIP42.98■■■■■ 4.472e-7■■■■□ 22.6
IRF3-227ENST00000600911 CECR2Q9BXF3 1484 aa42.21■■■■■ 4.35
IRF3-227ENST00000600911 MROH2BQ7Z745 1585 aa41.84■■■■■ 4.29
IRF3-227ENST00000600911 EIF4G1Q04637 1599 aaKnown RBP41.84■■■■■ 4.29
IRF3-227ENST00000600911 SMARCA4P51532 1647 aa41.84■■■■■ 4.29
IRF3-227ENST00000600911 BAZ1AQ9NRL2 1556 aaPredicted RBP41.83■■■■■ 4.29
IRF3-227ENST00000600911 RSF1Q96T23 1441 aaPredicted RBP41.66■■■■■ 4.26
IRF3-227ENST00000600911 WIZO95785 1651 aa41.5■■■■■ 4.23
IRF3-227ENST00000600911 CC2D2AQ9P2K1 1620 aa41.46■■■■■ 4.23
IRF3-227ENST00000600911 SUPT5HO00267 1087 aaKnown RBP41.39■■■■■ 4.22
IRF3-227ENST00000600911 PEG3Q9GZU2 1588 aa41.34■■■■■ 4.21
IRF3-227ENST00000600911 ATAD2BQ9ULI0 1458 aa41.32■■■■■ 4.2
IRF3-227ENST00000600911 DNAJC5BQ9UF47 199 aa41.24■■■■■ 4.19
IRF3-227ENST00000600911 SMARCA2P51531 1590 aa41.21■■■■■ 4.19
IRF3-227ENST00000600911 NCAPD3P42695 1498 aa41.07■■■■■ 4.16
IRF3-227ENST00000600911 BAZ1BQ9UIG0 1483 aaKnown RBP40.99■■■■■ 4.15
IRF3-227ENST00000600911 HMGXB3Q12766 1538 aa40.97■■■■■ 4.15
IRF3-227ENST00000600911 TOP2AP11388 1531 aaKnown RBP40.96■■■■■ 4.15
IRF3-227ENST00000600911 CCDC88BA6NC98 1476 aa40.53■■■■■ 4.08
IRF3-227ENST00000600911 NESP48681 1621 aa40■■■■□ 3.99
IRF3-227ENST00000600911 CFTRP13569 1480 aa39.93■■■■□ 3.98
IRF3-227ENST00000600911 CADPSQ9ULU8 1353 aa39.93■■■■□ 3.98
IRF3-227ENST00000600911 LAMC3Q9Y6N6 1575 aa39.82■■■■□ 3.97
IRF3-227ENST00000600911 PRDM2Q13029 1718 aa39.8■■■■□ 3.96
IRF3-227ENST00000600911 KIF21AQ7Z4S6 1674 aa39.55■■■■□ 3.92
IRF3-227ENST00000600911 FANCD2Q9BXW9 1451 aa39.53■■■■□ 3.92
IRF3-227ENST00000600911 ABCC8Q09428 1581 aa39.47■■■■□ 3.91
IRF3-227ENST00000600911 PDS5BQ9NTI5 1447 aa39.45■■■■□ 3.91
IRF3-227ENST00000600911 CEP164Q9UPV0 1460 aa39.34■■■■□ 3.89
IRF3-227ENST00000600911 ERCC6Q03468 1493 aa39.24■■■■□ 3.87
IRF3-227ENST00000600911 CHIC1Q5VXU3 224 aa39.22■■■■□ 3.87
IRF3-227ENST00000600911 SYNJ1O43426 1573 aa39.2■■■■□ 3.87
IRF3-227ENST00000600911 WRNQ14191 1432 aaPredicted RBP eCLIP39.19■■■■□ 3.86
IRF3-227ENST00000600911 CUX1P39880 1505 aa39.18■■■■□ 3.86
IRF3-227ENST00000600911 URB2Q14146 1524 aaKnown RBP39.16■■■■□ 3.86
IRF3-227ENST00000600911 THOC2Q8NI27 1593 aaKnown RBP39.11■■■■□ 3.85
IRF3-227ENST00000600911 MRC2Q9UBG0 1479 aa39.08■■■■□ 3.85
IRF3-227ENST00000600911 BIVM-ERCC5R4GMW8 1640 aa39.05■■■■□ 3.84
IRF3-227ENST00000600911 TOPBP1Q92547 1522 aa39.04■■■■□ 3.84
IRF3-227ENST00000600911 DNMBPQ6XZF7 1577 aa39.04■■■■□ 3.84
IRF3-227ENST00000600911 TOP2BQ02880 1626 aa39.04■■■■□ 3.84
IRF3-227ENST00000600911 WDR62O43379 1518 aa38.96■■■■□ 3.83
IRF3-227ENST00000600911 TRIM41Q8WV44 630 aa38.91■■■■□ 3.82
IRF3-227ENST00000600911 FGD5Q6ZNL6 1462 aa38.84■■■■□ 3.81
IRF3-227ENST00000600911 POLA1P09884 1462 aaPredicted RBP38.78■■■■□ 3.8
IRF3-227ENST00000600911 CUX2O14529 1486 aa38.68■■■■□ 3.78
IRF3-227ENST00000600911 RAD54L2Q9Y4B4 1467 aa38.68■■■■□ 3.78
IRF3-227ENST00000600911 TARBP1Q13395 1621 aaKnown RBP38.58■■■■□ 3.77
IRF3-227ENST00000600911 SOGA1O94964 1423 aa38.57■■■■□ 3.76
IRF3-227ENST00000600911 WDR97A6NE52 1622 aa38.54■■■■□ 3.76
IRF3-227ENST00000600911 RUSC2Q8N2Y8 1516 aa38.48■■■■□ 3.75
IRF3-227ENST00000600911 ABCA10Q8WWZ4 1543 aa38.45■■■■□ 3.75
IRF3-227ENST00000600911 IFT140Q96RY7 1462 aa38.44■■■■□ 3.74
IRF3-227ENST00000600911 ZNF608Q9ULD9 1512 aaPredicted RBP38.38■■■■□ 3.73
IRF3-227ENST00000600911 TDRD9Q8NDG6 1382 aaKnown RBP38.31■■■■□ 3.72
IRF3-227ENST00000600911 ABCA5Q8WWZ7 1642 aa38.29■■■■□ 3.72
IRF3-227ENST00000600911 FAM9AQ8IZU1 332 aaPredicted RBP38.27■■■■□ 3.72
IRF3-227ENST00000600911 AQRO60306 1485 aaKnown RBP eCLIP38.25■■■■□ 3.712e-7■■■■■ 27.5
IRF3-227ENST00000600911 EIF4G3O43432 1585 aaKnown RBP38.23■■■■□ 3.71
IRF3-227ENST00000600911 KIF27Q86VH2 1401 aa38.22■■■■□ 3.71
IRF3-227ENST00000600911 GAPVD1Q14C86 1478 aa38.15■■■■□ 3.7
IRF3-227ENST00000600911 PBRM1Q86U86 1689 aa38.13■■■■□ 3.69
IRF3-227ENST00000600911 EEA1Q15075 1411 aa38.07■■■■□ 3.69
IRF3-227ENST00000600911 IGF1RP08069 1367 aa38.04■■■■□ 3.68
IRF3-227ENST00000600911 CSRNP3Q8WYN3 585 aa37.98■■■■□ 3.67
IRF3-227ENST00000600911 ERICH3Q5RHP9 1530 aa37.97■■■■□ 3.67
IRF3-227ENST00000600911 GRIN2BQ13224 1484 aa37.97■■■■□ 3.67
IRF3-227ENST00000600911 SNAPC4Q5SXM2 1469 aa37.89■■■■□ 3.66
IRF3-227ENST00000600911 ADAMTS12P58397 1594 aa37.84■■■■□ 3.65
IRF3-227ENST00000600911 PRXQ9BXM0 1461 aa37.84■■■■□ 3.65
IRF3-227ENST00000600911 CUL7Q14999 1698 aa37.84■■■■□ 3.65
IRF3-227ENST00000600911 EHMT2Q96KQ7 1210 aa37.79■■■■□ 3.64
IRF3-227ENST00000600911 CARMIL1Q5VZK9 1371 aa37.79■■■■□ 3.64
IRF3-227ENST00000600911 KIF21BO75037 1637 aa37.77■■■■□ 3.64
IRF3-227ENST00000600911 RAPGEF2Q9Y4G8 1499 aa37.74■■■■□ 3.63
IRF3-227ENST00000600911 MAGI1Q96QZ7 1491 aaPredicted RBP37.74■■■■□ 3.63
IRF3-227ENST00000600911 LOC105371045A0A1W2PR82 267 aa37.71■■■■□ 3.63
IRF3-227ENST00000600911 FHAD1B1AJZ9 1412 aa37.7■■■■□ 3.63
IRF3-227ENST00000600911 CHD1O14646 1710 aa37.61■■■■□ 3.61
IRF3-227ENST00000600911 SYNJ2O15056 1496 aa37.61■■■■□ 3.61
IRF3-227ENST00000600911 GOLGA3Q08378 1498 aa37.58■■■■□ 3.61
IRF3-227ENST00000600911 GRIN2AQ12879 1464 aa37.55■■■■□ 3.6
IRF3-227ENST00000600911 FBLN2P98095 1184 aa37.5■■■■□ 3.59
IRF3-227ENST00000600911 CHMP7Q8WUX9 453 aaPredicted RBP37.47■■■■□ 3.59
IRF3-227ENST00000600911 CEP170Q5SW79 1584 aa37.42■■■■□ 3.58
IRF3-227ENST00000600911 UBTFP17480 764 aaKnown RBP37.38■■■■□ 3.57
IRF3-227ENST00000600911 CTTNBP2Q8WZ74 1663 aa37.38■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms