Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SAP30BP-215ENST00000581207 930 ntTSL 210.11□□□□□ -0.799e-6■■■□□ 15.9
CDC40O60508 CCDC85C-207ENST00000557769 3793 ntTSL 2 BASIC9.99□□□□□ -0.819e-6■■■□□ 15.9
CDC40O60508 SAP30BP-203ENST00000542343 1011 ntTSL 29.51□□□□□ -0.899e-6■■■□□ 15.9
CDC40O60508 CCDC85C-203ENST00000554996 619 ntTSL 49.44□□□□□ -0.99e-6■■■□□ 15.9
CDC40O60508 MAT2A-203ENST00000465151 583 ntTSL 29.28□□□□□ -0.929e-6■■■□□ 15.9
CDC40O60508 SRPK1-202ENST00000361690 4286 ntTSL 1 (best)9.18□□□□□ -0.949e-6■■■□□ 15.9
CDC40O60508 SRPK1-209ENST00000507909 581 ntTSL 48.88□□□□□ -0.999e-6■■■□□ 15.9
CDC40O60508 SRPK1-205ENST00000423325 4357 ntTSL 2 BASIC8.73□□□□□ -1.019e-6■■■□□ 15.9
CDC40O60508 PPM1B-210ENST00000487286 535 ntTSL 47.02□□□□□ -1.299e-6■■■□□ 15.9
CDC40O60508 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC6.99□□□□□ -1.299e-6■■■□□ 15.9
CDC40O60508 MAT2A-204ENST00000469221 691 ntTSL 26.31□□□□□ -1.49e-6■■■□□ 15.9
CDC40O60508 SRPK1-212ENST00000512445 559 ntTSL 56.13□□□□□ -1.439e-6■■■□□ 15.9
CDC40O60508 SRPK1-213ENST00000513367 634 ntTSL 25.79□□□□□ -1.489e-6■■■□□ 15.9
CDC40O60508 CLPX-202ENST00000558103 605 ntTSL 55.54□□□□□ -1.529e-6■■■□□ 15.9
CDC40O60508 PPM1B-206ENST00000409473 923 ntTSL 53.63□□□□□ -1.839e-6■■■□□ 15.9
CDC40O60508 PPM1B-209ENST00000459690 676 ntTSL 23.43□□□□□ -1.869e-6■■■□□ 15.9
CDC40O60508 SRPK1-211ENST00000510290 621 ntTSL 33.32□□□□□ -1.889e-6■■■□□ 15.9
CDC40O60508 SAP30BP-216ENST00000581385 253 ntTSL 21.02□□□□□ -2.259e-6■■■□□ 15.9
CDC40O60508 OAZ1-204ENST00000588673 780 ntTSL 318.74■□□□□ 0.595e-8■■■□□ 15.8
CDC40O60508 OAZ1-203ENST00000586054 2832 nt18.69■□□□□ 0.585e-8■■■□□ 15.8
CDC40O60508 XPO1-212ENST00000457483 488 ntTSL 46.12□□□□□ -1.433e-7■■■□□ 15.8
CDC40O60508 XPO1-220ENST00000481214 720 ntTSL 21.55□□□□□ -2.163e-7■■■□□ 15.8
CDC40O60508 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.033e-9■■■□□ 15.8
CDC40O60508 NDRG1-210ENST00000518480 558 ntTSL 415.18■□□□□ 0.023e-9■■■□□ 15.8
CDC40O60508 NDRG1-225ENST00000522890 581 ntTSL 514.89□□□□□ -0.033e-9■■■□□ 15.8
CDC40O60508 NDRG1-211ENST00000519228 729 ntTSL 414.09□□□□□ -0.153e-9■■■□□ 15.8
CDC40O60508 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.08□□□□□ -0.323e-9■■■□□ 15.8
CDC40O60508 NDRG1-214ENST00000520230 582 ntTSL 412.53□□□□□ -0.43e-9■■■□□ 15.8
CDC40O60508 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC12.11□□□□□ -0.473e-9■■■□□ 15.8
CDC40O60508 NDRG1-206ENST00000518010 581 ntTSL 412.05□□□□□ -0.483e-9■■■□□ 15.8
CDC40O60508 NDRG1-219ENST00000521544 709 ntTSL 511.95□□□□□ -0.53e-9■■■□□ 15.8
CDC40O60508 NDRG1-213ENST00000519580 550 ntTSL 511.95□□□□□ -0.53e-9■■■□□ 15.8
CDC40O60508 NDRG1-221ENST00000522377 1103 ntTSL 511.64□□□□□ -0.553e-9■■■□□ 15.8
CDC40O60508 NDRG1-204ENST00000517599 2918 ntTSL 210.93□□□□□ -0.663e-9■■■□□ 15.8
CDC40O60508 NDRG1-207ENST00000518066 560 ntTSL 5 BASIC10.84□□□□□ -0.673e-9■■■□□ 15.8
CDC40O60508 NDRG1-229ENST00000537882 2975 ntTSL 2 BASIC10.32□□□□□ -0.763e-9■■■□□ 15.8
CDC40O60508 NDRG1-201ENST00000323851 3014 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.823e-9■■■□□ 15.8
CDC40O60508 NDRG1-215ENST00000520943 536 ntTSL 49.38□□□□□ -0.913e-9■■■□□ 15.8
CDC40O60508 NDRG1-227ENST00000523892 562 ntTSL 48.12□□□□□ -1.113e-9■■■□□ 15.8
CDC40O60508 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.46□□□□□ -1.544e-11■■■□□ 15.7
CDC40O60508 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.678e-7■■■□□ 15.7
CDC40O60508 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.638e-7■■■□□ 15.7
CDC40O60508 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.83■□□□□ 0.68e-7■■■□□ 15.7
CDC40O60508 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.97■□□□□ 0.158e-7■■■□□ 15.7
CDC40O60508 GNL3-201ENST00000394799 2041 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.561e-6■■■□□ 15.7
CDC40O60508 GNL3-202ENST00000418458 2040 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.661e-6■■■□□ 15.7
CDC40O60508 GNL3-211ENST00000496254 2118 ntTSL 55.13□□□□□ -1.591e-6■■■□□ 15.7
CDC40O60508 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.58■□□□□ 0.891e-13■■■□□ 15.6
CDC40O60508 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.82■□□□□ 0.761e-13■■■□□ 15.6
CDC40O60508 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.15□□□□□ -0.141e-13■■■□□ 15.6
CDC40O60508 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.251e-13■■■□□ 15.6
CDC40O60508 RING1-202ENST00000478431 1532 ntTSL 1 (best)22.18■■□□□ 1.144e-7■■■□□ 15.6
CDC40O60508 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.064e-7■■■□□ 15.6
CDC40O60508 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.853e-6■■■□□ 15.6
CDC40O60508 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.35■□□□□ 0.374e-9■■■□□ 15.5
CDC40O60508 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.253e-6■■■□□ 15.5
CDC40O60508 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.213e-6■■■□□ 15.5
CDC40O60508 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.42□□□□□ -0.263e-6■■■□□ 15.5
CDC40O60508 HECTD1-204ENST00000553957 4395 ntTSL 24□□□□□ -1.773e-6■■■□□ 15.5
CDC40O60508 NKD1-202ENST00000564336 477 ntTSL 320.8■□□□□ 0.921e-6■■■□□ 15.5
CDC40O60508 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.293e-6■■■□□ 15.4
CDC40O60508 WDR27-202ENST00000441385 683 ntTSL 311.62□□□□□ -0.553e-6■■■□□ 15.4
CDC40O60508 WDR27-203ENST00000448612 3178 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.593e-6■■■□□ 15.4
CDC40O60508 WDR27-211ENST00000546525 3511 ntTSL 1 (best)10.96□□□□□ -0.653e-6■■■□□ 15.4
CDC40O60508 WDR27-205ENST00000467418 947 ntTSL 59.33□□□□□ -0.923e-6■■■□□ 15.4
CDC40O60508 SERGEF-212ENST00000529728 1396 ntTSL 523.02■■□□□ 1.285e-7■■■□□ 15.4
CDC40O60508 SERGEF-214ENST00000530925 793 ntTSL 320.98■□□□□ 0.955e-7■■■□□ 15.4
CDC40O60508 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.51■□□□□ 0.875e-7■■■□□ 15.4
CDC40O60508 SERGEF-213ENST00000530613 893 ntTSL 520.43■□□□□ 0.865e-7■■■□□ 15.4
CDC40O60508 SERGEF-207ENST00000527494 1314 ntTSL 519.92■□□□□ 0.785e-7■■■□□ 15.4
CDC40O60508 SERGEF-220ENST00000532389 833 ntTSL 519.51■□□□□ 0.715e-7■■■□□ 15.4
CDC40O60508 SERGEF-223ENST00000533328 541 ntTSL 519.33■□□□□ 0.685e-7■■■□□ 15.4
CDC40O60508 SERGEF-218ENST00000532212 622 ntTSL 319.33■□□□□ 0.685e-7■■■□□ 15.4
CDC40O60508 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.385e-7■■■□□ 15.4
CDC40O60508 SERGEF-205ENST00000525422 1525 ntTSL 1 (best)15.63■□□□□ 0.095e-7■■■□□ 15.4
CDC40O60508 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC12.73□□□□□ -0.375e-7■■■□□ 15.4
CDC40O60508 SERGEF-203ENST00000524716 548 ntTSL 48.93□□□□□ -0.985e-7■■■□□ 15.4
CDC40O60508 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC6.94□□□□□ -1.35e-7■■■□□ 15.4
CDC40O60508 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.04■□□□□ -05e-7■■■□□ 15.4
CDC40O60508 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.065e-7■■■□□ 15.4
CDC40O60508 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.95□□□□□ -0.345e-7■■■□□ 15.4
CDC40O60508 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.355e-7■■■□□ 15.4
CDC40O60508 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.252e-7■■■□□ 15.3
CDC40O60508 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.238e-11■■■□□ 15.3
CDC40O60508 THUMPD2-201ENST00000378727 2089 ntTSL 1 (best)15.79■□□□□ 0.128e-11■■■□□ 15.3
CDC40O60508 THUMPD2-208ENST00000530522 1561 ntTSL 215.07■□□□□ 08e-11■■■□□ 15.3
CDC40O60508 ANKRD17-205ENST00000513908 852 ntTSL 29.61□□□□□ -0.872e-7■■■□□ 15.3
CDC40O60508 PTPN12-216ENST00000523952 500 ntTSL 48.82□□□□□ -12e-7■■■□□ 15.3
CDC40O60508 THUMPD2-203ENST00000460072 3148 ntTSL 1 (best)6.43□□□□□ -1.388e-11■■■□□ 15.3
CDC40O60508 PTPN12-209ENST00000460731 582 ntTSL 25.07□□□□□ -1.62e-7■■■□□ 15.3
CDC40O60508 THUMPD2-205ENST00000510781 996 ntTSL 23.14□□□□□ -1.918e-11■■■□□ 15.3
CDC40O60508 ANKRD17-209ENST00000560507 563 ntTSL 32.97□□□□□ -1.932e-7■■■□□ 15.3
CDC40O60508 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.361e-6■■■□□ 15.3
CDC40O60508 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.72■■□□□ 1.072e-7■■■□□ 15.3
CDC40O60508 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.332e-7■■■□□ 15.3
CDC40O60508 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.272e-7■■■□□ 15.3
CDC40O60508 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.052e-7■■■□□ 15.3
CDC40O60508 DDX42-204ENST00000577940 1427 ntTSL 57.72□□□□□ -1.172e-7■■■□□ 15.3
CDC40O60508 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC6.55□□□□□ -1.362e-7■■■□□ 15.3
CDC40O60508 DDX42-218ENST00000584261 510 ntTSL 35.59□□□□□ -1.512e-7■■■□□ 15.3
Retrieved 100 of 5,364 protein–RNA pairs in 262.8 ms