RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 NISCHQ9Y2I1 1504 aa14.74□□□□□ -0.05
MSH6-209ENST00000538136 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
MSH6-209ENST00000538136 SHROOM4Q9ULL8 1493 aa13.52□□□□□ -0.24
MSH6-209ENST00000538136 ABCC9O60706 1549 aa13.43□□□□□ -0.26
MSH6-209ENST00000538136 PABPN1Q86U42 306 aaKnown RBP eCLIP13.16□□□□□ -0.3
MSH6-209ENST00000538136 SUPT5HO00267 1087 aaKnown RBP13.13□□□□□ -0.31
MSH6-209ENST00000538136 EHMT2Q96KQ7 1210 aa12.79□□□□□ -0.36
MSH6-209ENST00000538136 FAM9AQ8IZU1 332 aaPredicted RBP12.41□□□□□ -0.42
MSH6-209ENST00000538136 RANGAP1P46060 587 aaPredicted RBP12.37□□□□□ -0.43
MSH6-209ENST00000538136 SCRIBQ14160 1630 aa12.31□□□□□ -0.44
MSH6-209ENST00000538136 TTBK1Q5TCY1 1321 aaPredicted RBP12.24□□□□□ -0.45
MSH6-209ENST00000538136 CCDC180Q9P1Z9 1646 aa12.22□□□□□ -0.45
MSH6-209ENST00000538136 DNAJC5BQ9UF47 199 aa12.17□□□□□ -0.46
MSH6-209ENST00000538136 ZCCHC6Q5VYS8 1495 aaKnown RBP12.12□□□□□ -0.47
MSH6-209ENST00000538136 RB1CC1Q8TDY2 1594 aa12.09□□□□□ -0.47
MSH6-209ENST00000538136 FBLN2P98095 1184 aa12.06□□□□□ -0.48
MSH6-209ENST00000538136 TRIM41Q8WV44 630 aa12.01□□□□□ -0.49
MSH6-209ENST00000538136 ATP1B4Q9UN42 357 aaPredicted RBP12□□□□□ -0.49
MSH6-209ENST00000538136 NACADO15069 1562 aa11.92□□□□□ -0.5
MSH6-209ENST00000538136 CECR2Q9BXF3 1484 aa11.9□□□□□ -0.5
MSH6-209ENST00000538136 UBTFP17480 764 aaKnown RBP11.84□□□□□ -0.51
MSH6-209ENST00000538136 ARID3CA6NKF2 412 aa11.79□□□□□ -0.52
MSH6-209ENST00000538136 PPARGC1BQ86YN6 1023 aaKnown RBP11.78□□□□□ -0.52
MSH6-209ENST00000538136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.75□□□□□ -0.53
MSH6-209ENST00000538136 HNRNPUL2Q1KMD3 747 aaKnown RBP11.75□□□□□ -0.53
MSH6-209ENST00000538136 LOC105371045A0A1W2PR82 267 aa11.7□□□□□ -0.54
MSH6-209ENST00000538136 ERCC6Q03468 1493 aa11.68□□□□□ -0.54
MSH6-209ENST00000538136 P3H3Q8IVL6 736 aa11.67□□□□□ -0.54
MSH6-209ENST00000538136 RSF1Q96T23 1441 aaPredicted RBP11.63□□□□□ -0.55
MSH6-209ENST00000538136 BAZ1BQ9UIG0 1483 aaKnown RBP11.62□□□□□ -0.55
MSH6-209ENST00000538136 CHIC1Q5VXU3 224 aa11.6□□□□□ -0.55
MSH6-209ENST00000538136 MROH2BQ7Z745 1585 aa11.59□□□□□ -0.55
MSH6-209ENST00000538136 MYT1LQ9UL68 1186 aa11.56□□□□□ -0.56
MSH6-209ENST00000538136 APLP2Q06481 763 aa11.54□□□□□ -0.56
MSH6-209ENST00000538136 CHMP7Q8WUX9 453 aaPredicted RBP11.52□□□□□ -0.57
MSH6-209ENST00000538136 DCAF1Q9Y4B6 1507 aa11.5□□□□□ -0.57
MSH6-209ENST00000538136 PLPPR3Q6T4P5 718 aa11.49□□□□□ -0.57
MSH6-209ENST00000538136 ITGAEP38570 1179 aa11.46□□□□□ -0.58
MSH6-209ENST00000538136 NESP48681 1621 aa11.45□□□□□ -0.58
MSH6-209ENST00000538136 EIF4G1Q04637 1599 aaKnown RBP11.44□□□□□ -0.58
MSH6-209ENST00000538136 ATAD2BQ9ULI0 1458 aa11.44□□□□□ -0.58
MSH6-209ENST00000538136 TRHP20396 242 aaPredicted RBP11.43□□□□□ -0.58
MSH6-209ENST00000538136 BAZ1AQ9NRL2 1556 aaPredicted RBP11.42□□□□□ -0.58
MSH6-209ENST00000538136 TDRD9Q8NDG6 1382 aaKnown RBP11.41□□□□□ -0.58
MSH6-209ENST00000538136 BICRAQ9NZM4 1560 aa11.41□□□□□ -0.58
MSH6-209ENST00000538136 CC2D2AQ9P2K1 1620 aa11.41□□□□□ -0.58
MSH6-209ENST00000538136 WIZO95785 1651 aa11.39□□□□□ -0.59
MSH6-209ENST00000538136 SMARCA2P51531 1590 aa11.35□□□□□ -0.59
MSH6-209ENST00000538136 CYB5RLQ6IPT4 315 aa11.35□□□□□ -0.59
MSH6-209ENST00000538136 MYO15BQ96JP2 1530 aa11.35□□□□□ -0.59
MSH6-209ENST00000538136 CCDC88BA6NC98 1476 aa11.33□□□□□ -0.6
MSH6-209ENST00000538136 CADPSQ9ULU8 1353 aa11.33□□□□□ -0.6
MSH6-209ENST00000538136 KCNH8Q96L42 1107 aa11.31□□□□□ -0.6
MSH6-209ENST00000538136 CSRNP3Q8WYN3 585 aa11.31□□□□□ -0.6
MSH6-209ENST00000538136 PDS5BQ9NTI5 1447 aa11.28□□□□□ -0.6
MSH6-209ENST00000538136 NPM1P06748 294 aaKnown RBP eCLIP11.25□□□□□ -0.61
MSH6-209ENST00000538136 ZNF777Q9ULD5 760 aaPredicted RBP11.25□□□□□ -0.61
MSH6-209ENST00000538136 SMARCA4P51532 1647 aa11.25□□□□□ -0.61
MSH6-209ENST00000538136 SENP3Q9H4L4 574 aaPredicted RBP11.22□□□□□ -0.61
MSH6-209ENST00000538136 WRNQ14191 1432 aaPredicted RBP eCLIP11.2□□□□□ -0.62
MSH6-209ENST00000538136 ABCC8Q09428 1581 aa11.2□□□□□ -0.62
MSH6-209ENST00000538136 UNC13AQ9UPW8 1703 aa11.19□□□□□ -0.62
MSH6-209ENST00000538136 NCAPD3P42695 1498 aa11.19□□□□□ -0.62
MSH6-209ENST00000538136 FANCD2Q9BXW9 1451 aa11.19□□□□□ -0.62
MSH6-209ENST00000538136 OSCARQ8IYS5 282 aa11.17□□□□□ -0.62
MSH6-209ENST00000538136 PCGF6Q9BYE7 350 aa11.17□□□□□ -0.62
MSH6-209ENST00000538136 SOGA1O94964 1423 aa11.17□□□□□ -0.62
MSH6-209ENST00000538136 AQRO60306 1485 aaKnown RBP eCLIP11.15□□□□□ -0.628e-7■■■■□ 22.6
MSH6-209ENST00000538136 CUX2O14529 1486 aa11.14□□□□□ -0.63
MSH6-209ENST00000538136 RAD54L2Q9Y4B4 1467 aa11.14□□□□□ -0.63
MSH6-209ENST00000538136 CEP164Q9UPV0 1460 aa11.14□□□□□ -0.63
MSH6-209ENST00000538136 FAM50AQ14320 339 aaKnown RBP11.14□□□□□ -0.63
MSH6-209ENST00000538136 TOP2AP11388 1531 aaKnown RBP11.04□□□□□ -0.64
MSH6-209ENST00000538136 JPH4Q96JJ6 628 aa11.03□□□□□ -0.64
MSH6-209ENST00000538136 MLECQ14165 292 aa11.02□□□□□ -0.64
MSH6-209ENST00000538136 CARMIL1Q5VZK9 1371 aa11.01□□□□□ -0.65
MSH6-209ENST00000538136 CHIC2Q9UKJ5 165 aa11.01□□□□□ -0.65
MSH6-209ENST00000538136 RUSC2Q8N2Y8 1516 aa11□□□□□ -0.65
MSH6-209ENST00000538136 ARID4BQ4LE39 1312 aaPredicted RBP11□□□□□ -0.65
MSH6-209ENST00000538136 KIF27Q86VH2 1401 aa10.99□□□□□ -0.65
MSH6-209ENST00000538136 CNGB1Q14028 1251 aaPredicted RBP10.96□□□□□ -0.66
MSH6-209ENST00000538136 FGD5Q6ZNL6 1462 aa10.95□□□□□ -0.66
MSH6-209ENST00000538136 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.94□□□□□ -0.661e-10■■■□□ 14.8
MSH6-209ENST00000538136 TRIM52Q96A61 297 aa10.93□□□□□ -0.66
MSH6-209ENST00000538136 CFTRP13569 1480 aa10.93□□□□□ -0.66
MSH6-209ENST00000538136 ZNF608Q9ULD9 1512 aaPredicted RBP10.92□□□□□ -0.66
MSH6-209ENST00000538136 PLEKHD1A6NEE1 506 aa10.92□□□□□ -0.66
MSH6-209ENST00000538136 BCANQ96GW7 911 aa10.91□□□□□ -0.66
MSH6-209ENST00000538136 ESF1Q9H501 851 aaKnown RBP10.89□□□□□ -0.67
MSH6-209ENST00000538136 CDK11AQ9UQ88 783 aaPredicted RBP10.89□□□□□ -0.67
MSH6-209ENST00000538136 MRC2Q9UBG0 1479 aa10.89□□□□□ -0.67
MSH6-209ENST00000538136 FAM69CQ0P6D2 419 aa10.89□□□□□ -0.67
MSH6-209ENST00000538136 CHGAP10645 457 aaKnown RBP10.88□□□□□ -0.67
MSH6-209ENST00000538136 GAPVD1Q14C86 1478 aa10.86□□□□□ -0.67
MSH6-209ENST00000538136 CCER1Q8TC90 406 aaPredicted RBP10.85□□□□□ -0.67
MSH6-209ENST00000538136 POLR3GLQ9BT43 218 aa10.85□□□□□ -0.67
MSH6-209ENST00000538136 HMGXB3Q12766 1538 aa10.84□□□□□ -0.67
MSH6-209ENST00000538136 ZNF326Q5BKZ1 582 aaKnown RBP10.84□□□□□ -0.67
MSH6-209ENST00000538136 TOPBP1Q92547 1522 aa10.84□□□□□ -0.67
MSH6-209ENST00000538136 PLEKHG5O94827 1062 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms