RNA–Protein interactions for RNA: ENST00000356396.8

LSS-201, Transcript of lanosterol synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSS, Length 2,995 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-201ENST00000356396 NISCHQ9Y2I1 1504 aa29.99■■■□□ 2.39
LSS-201ENST00000356396 DCAF8L2P0C7V8 631 aa26.26■■□□□ 1.79
LSS-201ENST00000356396 SHROOM4Q9ULL8 1493 aa26.11■■□□□ 1.77
LSS-201ENST00000356396 CCDC180Q9P1Z9 1646 aa25.35■■□□□ 1.65
LSS-201ENST00000356396 SUPT5HO00267 1087 aaKnown RBP25.22■■□□□ 1.63
LSS-201ENST00000356396 ZCCHC6Q5VYS8 1495 aaKnown RBP25.14■■□□□ 1.61
LSS-201ENST00000356396 ABCC9O60706 1549 aa25.12■■□□□ 1.61
LSS-201ENST00000356396 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
LSS-201ENST00000356396 PABPN1Q86U42 306 aaKnown RBP eCLIP24.18■■□□□ 1.461e-7■□□□□ 8.7
LSS-201ENST00000356396 DCAF1Q9Y4B6 1507 aa24.1■■□□□ 1.45
LSS-201ENST00000356396 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
LSS-201ENST00000356396 NACADO15069 1562 aa23.78■■□□□ 1.4
LSS-201ENST00000356396 EHMT2Q96KQ7 1210 aa23.77■■□□□ 1.4
LSS-201ENST00000356396 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
LSS-201ENST00000356396 RB1CC1Q8TDY2 1594 aa23.68■■□□□ 1.38
LSS-201ENST00000356396 RSF1Q96T23 1441 aaPredicted RBP23.66■■□□□ 1.38
LSS-201ENST00000356396 MYO15BQ96JP2 1530 aa23.55■■□□□ 1.36
LSS-201ENST00000356396 MROH2BQ7Z745 1585 aa23.54■■□□□ 1.36
LSS-201ENST00000356396 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.36
LSS-201ENST00000356396 LOC105371045A0A1W2PR82 267 aa23.45■■□□□ 1.34
LSS-201ENST00000356396 UNC13AQ9UPW8 1703 aa23.41■■□□□ 1.34
LSS-201ENST00000356396 WIZO95785 1651 aa23.39■■□□□ 1.33
LSS-201ENST00000356396 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
LSS-201ENST00000356396 TRIM41Q8WV44 630 aa23.19■■□□□ 1.3
LSS-201ENST00000356396 BAZ1AQ9NRL2 1556 aaPredicted RBP22.99■■□□□ 1.27
LSS-201ENST00000356396 SMARCA4P51532 1647 aa22.97■■□□□ 1.27
LSS-201ENST00000356396 CCDC88BA6NC98 1476 aa22.86■■□□□ 1.25
LSS-201ENST00000356396 PPARGC1BQ86YN6 1023 aaKnown RBP22.81■■□□□ 1.24
LSS-201ENST00000356396 ABCC8Q09428 1581 aa22.81■■□□□ 1.24
LSS-201ENST00000356396 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
LSS-201ENST00000356396 TTBK1Q5TCY1 1321 aaPredicted RBP22.69■■□□□ 1.22
LSS-201ENST00000356396 RANGAP1P46060 587 aaPredicted RBP22.68■■□□□ 1.22
LSS-201ENST00000356396 ATAD2BQ9ULI0 1458 aa22.67■■□□□ 1.22
LSS-201ENST00000356396 TOP2AP11388 1531 aaKnown RBP22.66■■□□□ 1.22
LSS-201ENST00000356396 SMARCA2P51531 1590 aa22.65■■□□□ 1.22
LSS-201ENST00000356396 PCGF6Q9BYE7 350 aa22.63■■□□□ 1.21
LSS-201ENST00000356396 BAZ1BQ9UIG0 1483 aaKnown RBP22.62■■□□□ 1.21
LSS-201ENST00000356396 EIF4G1Q04637 1599 aaKnown RBP22.53■■□□□ 1.2
LSS-201ENST00000356396 RUSC2Q8N2Y8 1516 aa22.48■■□□□ 1.19
LSS-201ENST00000356396 SOGA1O94964 1423 aa22.47■■□□□ 1.19
LSS-201ENST00000356396 UBTFP17480 764 aaKnown RBP22.33■■□□□ 1.17
LSS-201ENST00000356396 WRNQ14191 1432 aaPredicted RBP eCLIP22.26■■□□□ 1.154e-8■■■□□ 14.6
LSS-201ENST00000356396 CC2D2AQ9P2K1 1620 aa22.25■■□□□ 1.15
LSS-201ENST00000356396 PEG3Q9GZU2 1588 aa22.22■■□□□ 1.15
LSS-201ENST00000356396 SYNJ1O43426 1573 aa22.17■■□□□ 1.14
LSS-201ENST00000356396 NCAPD3P42695 1498 aa22.17■■□□□ 1.14
LSS-201ENST00000356396 CSRNP3Q8WYN3 585 aa22.16■■□□□ 1.14
LSS-201ENST00000356396 NESP48681 1621 aa22.15■■□□□ 1.14
LSS-201ENST00000356396 HMGXB3Q12766 1538 aa21.94■■□□□ 1.1
LSS-201ENST00000356396 CADPSQ9ULU8 1353 aa21.91■■□□□ 1.1
LSS-201ENST00000356396 CUX1P39880 1505 aa21.88■■□□□ 1.09
LSS-201ENST00000356396 CFTRP13569 1480 aa21.87■■□□□ 1.09
LSS-201ENST00000356396 TRIM26Q12899 539 aaPredicted RBP21.85■■□□□ 1.09
LSS-201ENST00000356396 RAPGEF2Q9Y4G8 1499 aa21.84■■□□□ 1.09
LSS-201ENST00000356396 CEP162Q5TB80 1403 aa21.83■■□□□ 1.09
LSS-201ENST00000356396 P3H3Q8IVL6 736 aa21.83■■□□□ 1.09
LSS-201ENST00000356396 RAD54L2Q9Y4B4 1467 aa21.77■■□□□ 1.08
LSS-201ENST00000356396 FANCD2Q9BXW9 1451 aa21.75■■□□□ 1.07
LSS-201ENST00000356396 ATP1B4Q9UN42 357 aaPredicted RBP21.71■■□□□ 1.07
LSS-201ENST00000356396 CUX2O14529 1486 aa21.7■■□□□ 1.06
LSS-201ENST00000356396 TOP2BQ02880 1626 aa21.69■■□□□ 1.06
LSS-201ENST00000356396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.67■■□□□ 1.06
LSS-201ENST00000356396 TDRD9Q8NDG6 1382 aaKnown RBP21.67■■□□□ 1.06
LSS-201ENST00000356396 HRCP23327 699 aa21.66■■□□□ 1.06
LSS-201ENST00000356396 FGD5Q6ZNL6 1462 aa21.66■■□□□ 1.06
LSS-201ENST00000356396 GOLGA3Q08378 1498 aa21.65■■□□□ 1.06
LSS-201ENST00000356396 TNIKQ9UKE5 1360 aa21.63■■□□□ 1.05
LSS-201ENST00000356396 HNRNPUL2Q1KMD3 747 aaKnown RBP21.59■■□□□ 1.05
LSS-201ENST00000356396 CLIP1P30622 1438 aa21.58■■□□□ 1.04
LSS-201ENST00000356396 CEP164Q9UPV0 1460 aa21.55■■□□□ 1.04
LSS-201ENST00000356396 ARID3CA6NKF2 412 aa21.55■■□□□ 1.04
LSS-201ENST00000356396 KIF27Q86VH2 1401 aa21.55■■□□□ 1.04
LSS-201ENST00000356396 IGF1RP08069 1367 aa21.52■■□□□ 1.03
LSS-201ENST00000356396 EEA1Q15075 1411 aa21.51■■□□□ 1.03
LSS-201ENST00000356396 BIVM-ERCC5R4GMW8 1640 aa21.5■■□□□ 1.03
LSS-201ENST00000356396 URB2Q14146 1524 aaKnown RBP21.48■■□□□ 1.03
LSS-201ENST00000356396 ITGAEP38570 1179 aa21.48■■□□□ 1.03
LSS-201ENST00000356396 POLA1P09884 1462 aaPredicted RBP21.47■■□□□ 1.03
LSS-201ENST00000356396 KANK4Q5T7N3 995 aaPredicted RBP21.47■■□□□ 1.03
LSS-201ENST00000356396 TOPBP1Q92547 1522 aa21.46■■□□□ 1.03
LSS-201ENST00000356396 APLP2Q06481 763 aa21.45■■□□□ 1.02
LSS-201ENST00000356396 CARMIL1Q5VZK9 1371 aa21.44■■□□□ 1.02
LSS-201ENST00000356396 FBLN2P98095 1184 aa21.43■■□□□ 1.02
LSS-201ENST00000356396 KIF21AQ7Z4S6 1674 aa21.4■■□□□ 1.02
LSS-201ENST00000356396 AQRO60306 1485 aaKnown RBP eCLIP21.38■■□□□ 1.017e-7■■■■■ 40
LSS-201ENST00000356396 PRXQ9BXM0 1461 aa21.38■■□□□ 1.01
LSS-201ENST00000356396 CCER1Q8TC90 406 aaPredicted RBP21.35■■□□□ 1.01
LSS-201ENST00000356396 PDS5BQ9NTI5 1447 aa21.35■■□□□ 1.01
LSS-201ENST00000356396 KIF21BO75037 1637 aa21.32■■□□□ 1
LSS-201ENST00000356396 ARAP1Q96P48 1450 aa21.32■■□□□ 1
LSS-201ENST00000356396 ERCC6Q03468 1493 aa21.3■■□□□ 1
LSS-201ENST00000356396 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
LSS-201ENST00000356396 ZNF608Q9ULD9 1512 aaPredicted RBP21.25■□□□□ 0.99
LSS-201ENST00000356396 LAMC3Q9Y6N6 1575 aa21.24■□□□□ 0.99
LSS-201ENST00000356396 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
LSS-201ENST00000356396 VPS8Q8N3P4 1428 aa21.22■□□□□ 0.99
LSS-201ENST00000356396 FHOD3Q2V2M9 1422 aa21.22■□□□□ 0.99
LSS-201ENST00000356396 ARHGAP35Q9NRY4 1499 aa21.2■□□□□ 0.98
LSS-201ENST00000356396 GAPVD1Q14C86 1478 aa21.15■□□□□ 0.98
LSS-201ENST00000356396 ABCA10Q8WWZ4 1543 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms