RNA–Protein interactions for RNA: ENST00000397728.7

LSS-202, Transcript of lanosterol synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSS, Length 4,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-202ENST00000397728 DCAF8L2P0C7V8 631 aa28.48■■■□□ 2.15
LSS-202ENST00000397728 NISCHQ9Y2I1 1504 aa28.39■■■□□ 2.14
LSS-202ENST00000397728 SHROOM4Q9ULL8 1493 aa26.41■■□□□ 1.82
LSS-202ENST00000397728 SUPT5HO00267 1087 aaKnown RBP26.38■■□□□ 1.81
LSS-202ENST00000397728 EHMT2Q96KQ7 1210 aa25.29■■□□□ 1.64
LSS-202ENST00000397728 ABCC9O60706 1549 aa24.94■■□□□ 1.58
LSS-202ENST00000397728 FAM9AQ8IZU1 332 aaPredicted RBP24.82■■□□□ 1.56
LSS-202ENST00000397728 APLP2Q06481 763 aa24.54■■□□□ 1.52
LSS-202ENST00000397728 PABPN1Q86U42 306 aaKnown RBP eCLIP24.52■■□□□ 1.521e-7■□□□□ 8.7
LSS-202ENST00000397728 TRIM41Q8WV44 630 aa24.48■■□□□ 1.51
LSS-202ENST00000397728 RANGAP1P46060 587 aaPredicted RBP24.46■■□□□ 1.51
LSS-202ENST00000397728 TTBK1Q5TCY1 1321 aaPredicted RBP24.24■■□□□ 1.47
LSS-202ENST00000397728 ATP1B4Q9UN42 357 aaPredicted RBP24.18■■□□□ 1.46
LSS-202ENST00000397728 UBTFP17480 764 aaKnown RBP24.14■■□□□ 1.45
LSS-202ENST00000397728 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.59■■□□□ 1.37
LSS-202ENST00000397728 HNRNPUL2Q1KMD3 747 aaKnown RBP23.59■■□□□ 1.37
LSS-202ENST00000397728 CCDC180Q9P1Z9 1646 aa23.58■■□□□ 1.36
LSS-202ENST00000397728 PCGF6Q9BYE7 350 aa23.56■■□□□ 1.36
LSS-202ENST00000397728 SCRIBQ14160 1630 aa23.52■■□□□ 1.36
LSS-202ENST00000397728 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.34
LSS-202ENST00000397728 PPARGC1BQ86YN6 1023 aaKnown RBP23.45■■□□□ 1.34
LSS-202ENST00000397728 ZCCHC6Q5VYS8 1495 aaKnown RBP23.45■■□□□ 1.34
LSS-202ENST00000397728 MYT1LQ9UL68 1186 aa23.38■■□□□ 1.33
LSS-202ENST00000397728 FBLN2P98095 1184 aa23.32■■□□□ 1.32
LSS-202ENST00000397728 LOC105371045A0A1W2PR82 267 aa23.31■■□□□ 1.32
LSS-202ENST00000397728 CCER1Q8TC90 406 aaPredicted RBP23.23■■□□□ 1.31
LSS-202ENST00000397728 RB1CC1Q8TDY2 1594 aa23.23■■□□□ 1.31
LSS-202ENST00000397728 ITGAEP38570 1179 aa23.18■■□□□ 1.3
LSS-202ENST00000397728 NACADO15069 1562 aa22.98■■□□□ 1.27
LSS-202ENST00000397728 ZEB1P37275 1124 aaPredicted RBP22.8■■□□□ 1.24
LSS-202ENST00000397728 P3H3Q8IVL6 736 aa22.79■■□□□ 1.24
LSS-202ENST00000397728 TRIM26Q12899 539 aaPredicted RBP22.78■■□□□ 1.24
LSS-202ENST00000397728 ARID3CA6NKF2 412 aa22.75■■□□□ 1.23
LSS-202ENST00000397728 CSRNP3Q8WYN3 585 aa22.75■■□□□ 1.23
LSS-202ENST00000397728 FAM50AQ14320 339 aaKnown RBP22.72■■□□□ 1.23
LSS-202ENST00000397728 POLR3GLQ9BT43 218 aa22.54■■□□□ 1.2
LSS-202ENST00000397728 BAZ1BQ9UIG0 1483 aaKnown RBP22.53■■□□□ 1.2
LSS-202ENST00000397728 RSF1Q96T23 1441 aaPredicted RBP22.52■■□□□ 1.2
LSS-202ENST00000397728 TRIM52Q96A61 297 aa22.49■■□□□ 1.19
LSS-202ENST00000397728 CHMP7Q8WUX9 453 aaPredicted RBP22.48■■□□□ 1.19
LSS-202ENST00000397728 DCAF1Q9Y4B6 1507 aa22.46■■□□□ 1.19
LSS-202ENST00000397728 NPM1P06748 294 aaKnown RBP eCLIP22.44■■□□□ 1.18
LSS-202ENST00000397728 PELP1Q8IZL8 1130 aaKnown RBP22.41■■□□□ 1.18
LSS-202ENST00000397728 ZNF777Q9ULD5 760 aaPredicted RBP22.4■■□□□ 1.18
LSS-202ENST00000397728 CDK11AQ9UQ88 783 aaPredicted RBP22.39■■□□□ 1.17
LSS-202ENST00000397728 CECR2Q9BXF3 1484 aa22.37■■□□□ 1.17
LSS-202ENST00000397728 ERCC6Q03468 1493 aa22.35■■□□□ 1.17
LSS-202ENST00000397728 CNGB1Q14028 1251 aaPredicted RBP22.31■■□□□ 1.16
LSS-202ENST00000397728 BAZ1AQ9NRL2 1556 aaPredicted RBP22.31■■□□□ 1.16
LSS-202ENST00000397728 SLC4A1APQ9BWU0 796 aaKnown RBP22.27■■□□□ 1.16
LSS-202ENST00000397728 NEUROD1Q13562 356 aa22.19■■□□□ 1.14
LSS-202ENST00000397728 CENPBP07199 599 aaPredicted RBP22.17■■□□□ 1.14
LSS-202ENST00000397728 YTHDC1Q96MU7 727 aaKnown RBP22.17■■□□□ 1.14
LSS-202ENST00000397728 MYT1Q01538 1121 aa22.15■■□□□ 1.14
LSS-202ENST00000397728 ZNF326Q5BKZ1 582 aaKnown RBP22.14■■□□□ 1.14
LSS-202ENST00000397728 WRNQ14191 1432 aaPredicted RBP eCLIP22.13■■□□□ 1.134e-8■■■□□ 14.6
LSS-202ENST00000397728 ESF1Q9H501 851 aaKnown RBP22.12■■□□□ 1.13
LSS-202ENST00000397728 PLPPR3Q6T4P5 718 aa22.09■■□□□ 1.13
LSS-202ENST00000397728 BCANQ96GW7 911 aa22.08■■□□□ 1.13
LSS-202ENST00000397728 MROH2BQ7Z745 1585 aa22.01■■□□□ 1.11
LSS-202ENST00000397728 HRCP23327 699 aa22■■□□□ 1.11
LSS-202ENST00000397728 MYO15BQ96JP2 1530 aa21.99■■□□□ 1.11
LSS-202ENST00000397728 KCNH8Q96L42 1107 aa21.98■■□□□ 1.11
LSS-202ENST00000397728 KIF27Q86VH2 1401 aa21.96■■□□□ 1.11
LSS-202ENST00000397728 SMARCA2P51531 1590 aa21.94■■□□□ 1.1
LSS-202ENST00000397728 NEFLP07196 543 aa21.92■■□□□ 1.1
LSS-202ENST00000397728 MTUS2Q5JR59 1369 aa21.91■■□□□ 1.1
LSS-202ENST00000397728 PDS5BQ9NTI5 1447 aa21.89■■□□□ 1.1
LSS-202ENST00000397728 CHIC2Q9UKJ5 165 aa21.89■■□□□ 1.1
LSS-202ENST00000397728 CHGAP10645 457 aaKnown RBP21.88■■□□□ 1.09
LSS-202ENST00000397728 STAG3Q9UJ98 1225 aa21.87■■□□□ 1.09
LSS-202ENST00000397728 CLIP1P30622 1438 aa21.86■■□□□ 1.09
LSS-202ENST00000397728 PLEKHD1A6NEE1 506 aa21.85■■□□□ 1.09
LSS-202ENST00000397728 TSPY4P0CV99 314 aa21.85■■□□□ 1.09
LSS-202ENST00000397728 TSPY10P0CW01 314 aa21.85■■□□□ 1.09
LSS-202ENST00000397728 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.83■■□□□ 1.091e-7■□□□□ 10.3
LSS-202ENST00000397728 EEA1Q15075 1411 aa21.83■■□□□ 1.09
LSS-202ENST00000397728 CCDC88BA6NC98 1476 aa21.82■■□□□ 1.08
LSS-202ENST00000397728 CUX2O14529 1486 aa21.77■■□□□ 1.08
LSS-202ENST00000397728 GOLGA3Q08378 1498 aa21.74■■□□□ 1.07
LSS-202ENST00000397728 CADPSQ9ULU8 1353 aa21.72■■□□□ 1.07
LSS-202ENST00000397728 ATAD2BQ9ULI0 1458 aa21.72■■□□□ 1.07
LSS-202ENST00000397728 TDRD9Q8NDG6 1382 aaKnown RBP21.71■■□□□ 1.07
LSS-202ENST00000397728 CARMIL1Q5VZK9 1371 aa21.68■■□□□ 1.06
LSS-202ENST00000397728 TRHP20396 242 aaPredicted RBP21.67■■□□□ 1.06
LSS-202ENST00000397728 SOGA1O94964 1423 aa21.65■■□□□ 1.06
LSS-202ENST00000397728 WIZO95785 1651 aa21.64■■□□□ 1.05
LSS-202ENST00000397728 CEP164Q9UPV0 1460 aa21.62■■□□□ 1.05
LSS-202ENST00000397728 CEP162Q5TB80 1403 aa21.61■■□□□ 1.05
LSS-202ENST00000397728 EIF4G1Q04637 1599 aaKnown RBP21.6■■□□□ 1.05
LSS-202ENST00000397728 ARID4BQ4LE39 1312 aaPredicted RBP21.6■■□□□ 1.05
LSS-202ENST00000397728 CFDP1Q9UEE9 299 aaPredicted RBP21.59■■□□□ 1.05
LSS-202ENST00000397728 TOP2AP11388 1531 aaKnown RBP21.57■■□□□ 1.04
LSS-202ENST00000397728 RRP7BPQ9NSQ0 103 aa21.57■■□□□ 1.04
LSS-202ENST00000397728 DIEXFQ68CQ4 756 aaKnown RBP21.56■■□□□ 1.04
LSS-202ENST00000397728 SMARCA4P51532 1647 aa21.54■■□□□ 1.04
LSS-202ENST00000397728 ABCC8Q09428 1581 aa21.54■■□□□ 1.04
LSS-202ENST00000397728 TONSLQ96HA7 1378 aa21.51■■□□□ 1.03
LSS-202ENST00000397728 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
LSS-202ENST00000397728 SENP3Q9H4L4 574 aaPredicted RBP21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms