RNA–Protein interactions for RNA: ENST00000523952.5

PTPN12-216, Transcript of protein tyrosine phosphatase, non-receptor type 12, humanhuman

TSL 4

Gene PTPN12, Length 500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN12-216ENST00000523952 NISCHQ9Y2I1 1504 aa23.74■■□□□ 1.39
PTPN12-216ENST00000523952 AEBP2Q6ZN18 517 aaPredicted RBP22.94■■□□□ 1.26
PTPN12-216ENST00000523952 ABCC9O60706 1549 aa21.9■■□□□ 1.1
PTPN12-216ENST00000523952 CCDC180Q9P1Z9 1646 aa21.63■■□□□ 1.05
PTPN12-216ENST00000523952 CHIC1Q5VXU3 224 aa21.43■■□□□ 1.02
PTPN12-216ENST00000523952 RB1CC1Q8TDY2 1594 aa20.74■□□□□ 0.91
PTPN12-216ENST00000523952 DNAJC5BQ9UF47 199 aa20.72■□□□□ 0.91
PTPN12-216ENST00000523952 NACADO15069 1562 aa20.46■□□□□ 0.87
PTPN12-216ENST00000523952 UNC13AQ9UPW8 1703 aa20.41■□□□□ 0.86
PTPN12-216ENST00000523952 DCAF8L2P0C7V8 631 aa20.29■□□□□ 0.84
PTPN12-216ENST00000523952 PABPN1Q86U42 306 aaKnown RBP eCLIP20.26■□□□□ 0.83
PTPN12-216ENST00000523952 BICRAQ9NZM4 1560 aa20.05■□□□□ 0.8
PTPN12-216ENST00000523952 MYO15BQ96JP2 1530 aa19.95■□□□□ 0.78
PTPN12-216ENST00000523952 CC2D2AQ9P2K1 1620 aa19.81■□□□□ 0.76
PTPN12-216ENST00000523952 CECR2Q9BXF3 1484 aa19.75■□□□□ 0.75
PTPN12-216ENST00000523952 SHROOM4Q9ULL8 1493 aa19.75■□□□□ 0.75
PTPN12-216ENST00000523952 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
PTPN12-216ENST00000523952 SENP3Q9H4L4 574 aaPredicted RBP19.65■□□□□ 0.74
PTPN12-216ENST00000523952 EIF4G1Q04637 1599 aaKnown RBP19.63■□□□□ 0.73
PTPN12-216ENST00000523952 ZCCHC6Q5VYS8 1495 aaKnown RBP19.57■□□□□ 0.72
PTPN12-216ENST00000523952 DCAF1Q9Y4B6 1507 aa19.56■□□□□ 0.72
PTPN12-216ENST00000523952 DNAJC5Q9H3Z4 198 aa19.38■□□□□ 0.69
PTPN12-216ENST00000523952 PHF23Q9BUL5 403 aaPredicted RBP19.31■□□□□ 0.68
PTPN12-216ENST00000523952 CUX2O14529 1486 aa19.03■□□□□ 0.64
PTPN12-216ENST00000523952 ERCC6Q03468 1493 aa19.01■□□□□ 0.63
PTPN12-216ENST00000523952 NCAPD3P42695 1498 aa18.78■□□□□ 0.6
PTPN12-216ENST00000523952 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
PTPN12-216ENST00000523952 HMGXB3Q12766 1538 aa18.69■□□□□ 0.58
PTPN12-216ENST00000523952 ATAD2BQ9ULI0 1458 aa18.69■□□□□ 0.58
PTPN12-216ENST00000523952 SMARCA4P51532 1647 aa18.68■□□□□ 0.58
PTPN12-216ENST00000523952 NESP48681 1621 aa18.67■□□□□ 0.58
PTPN12-216ENST00000523952 THOC2Q8NI27 1593 aaKnown RBP18.62■□□□□ 0.57
PTPN12-216ENST00000523952 KIF21AQ7Z4S6 1674 aa18.6■□□□□ 0.57
PTPN12-216ENST00000523952 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.56
PTPN12-216ENST00000523952 LAMC3Q9Y6N6 1575 aa18.55■□□□□ 0.56
PTPN12-216ENST00000523952 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
PTPN12-216ENST00000523952 TRIM41Q8WV44 630 aa18.49■□□□□ 0.55
PTPN12-216ENST00000523952 PEG3Q9GZU2 1588 aa18.42■□□□□ 0.54
PTPN12-216ENST00000523952 PDS5BQ9NTI5 1447 aa18.4■□□□□ 0.54
PTPN12-216ENST00000523952 FOXD1Q16676 465 aa18.4■□□□□ 0.54
PTPN12-216ENST00000523952 MROH2BQ7Z745 1585 aa18.28■□□□□ 0.52
PTPN12-216ENST00000523952 MRC2Q9UBG0 1479 aa18.27■□□□□ 0.52
PTPN12-216ENST00000523952 WDR62O43379 1518 aa18.24■□□□□ 0.51
PTPN12-216ENST00000523952 CADPSQ9ULU8 1353 aa18.2■□□□□ 0.5
PTPN12-216ENST00000523952 CEP164Q9UPV0 1460 aa18.15■□□□□ 0.5
PTPN12-216ENST00000523952 WIZO95785 1651 aa18.15■□□□□ 0.5
PTPN12-216ENST00000523952 OSCARQ8IYS5 282 aa18.08■□□□□ 0.48
PTPN12-216ENST00000523952 POTEDQ86YR6 584 aa18.06■□□□□ 0.48
PTPN12-216ENST00000523952 FANCD2Q9BXW9 1451 aa18.06■□□□□ 0.48
PTPN12-216ENST00000523952 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
PTPN12-216ENST00000523952 RIMBP3CA6NJZ7 1639 aa17.98■□□□□ 0.47
PTPN12-216ENST00000523952 RIMBP3BA6NNM3 1639 aa17.98■□□□□ 0.47
PTPN12-216ENST00000523952 RIMBP3Q9UFD9 1639 aa17.98■□□□□ 0.47
PTPN12-216ENST00000523952 CFTRP13569 1480 aa17.92■□□□□ 0.46
PTPN12-216ENST00000523952 URB2Q14146 1524 aaKnown RBP17.91■□□□□ 0.46
PTPN12-216ENST00000523952 TOP2AP11388 1531 aaKnown RBP17.83■□□□□ 0.45
PTPN12-216ENST00000523952 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
PTPN12-216ENST00000523952 CHD1O14646 1710 aa17.79■□□□□ 0.44
PTPN12-216ENST00000523952 IFT140Q96RY7 1462 aa17.76■□□□□ 0.43
PTPN12-216ENST00000523952 EIF4G3O43432 1585 aaKnown RBP17.74■□□□□ 0.43
PTPN12-216ENST00000523952 ZNF608Q9ULD9 1512 aaPredicted RBP17.74■□□□□ 0.43
PTPN12-216ENST00000523952 TRHP20396 242 aaPredicted RBP17.7■□□□□ 0.42
PTPN12-216ENST00000523952 RSF1Q96T23 1441 aaPredicted RBP17.7■□□□□ 0.42
PTPN12-216ENST00000523952 CYB5RLQ6IPT4 315 aa17.69■□□□□ 0.42
PTPN12-216ENST00000523952 TOPBP1Q92547 1522 aa17.67■□□□□ 0.42
PTPN12-216ENST00000523952 ABCC8Q09428 1581 aa17.65■□□□□ 0.42
PTPN12-216ENST00000523952 DNMBPQ6XZF7 1577 aa17.62■□□□□ 0.41
PTPN12-216ENST00000523952 FBLN2P98095 1184 aa17.59■□□□□ 0.41
PTPN12-216ENST00000523952 CCDC88BA6NC98 1476 aa17.58■□□□□ 0.41
PTPN12-216ENST00000523952 TARBP1Q13395 1621 aaKnown RBP17.58■□□□□ 0.4
PTPN12-216ENST00000523952 ARAP1Q96P48 1450 aa17.57■□□□□ 0.4
PTPN12-216ENST00000523952 AQRO60306 1485 aaKnown RBP eCLIP17.54■□□□□ 0.43e-7■■■■■ 30.5
PTPN12-216ENST00000523952 SYNJ1O43426 1573 aa17.45■□□□□ 0.38
PTPN12-216ENST00000523952 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
PTPN12-216ENST00000523952 MSH5O43196 834 aa17.44■□□□□ 0.38
PTPN12-216ENST00000523952 WDR97A6NE52 1622 aa17.41■□□□□ 0.38
PTPN12-216ENST00000523952 CLASP1Q7Z460 1538 aa17.39■□□□□ 0.37
PTPN12-216ENST00000523952 SNAPC4Q5SXM2 1469 aa17.38■□□□□ 0.37
PTPN12-216ENST00000523952 RAD54L2Q9Y4B4 1467 aa17.38■□□□□ 0.37
PTPN12-216ENST00000523952 PBRM1Q86U86 1689 aa17.37■□□□□ 0.37
PTPN12-216ENST00000523952 SOGA1O94964 1423 aa17.37■□□□□ 0.37
PTPN12-216ENST00000523952 CHMP7Q8WUX9 453 aaPredicted RBP17.36■□□□□ 0.37
PTPN12-216ENST00000523952 TDRD9Q8NDG6 1382 aaKnown RBP17.36■□□□□ 0.37
PTPN12-216ENST00000523952 MAGI1Q96QZ7 1491 aaPredicted RBP17.33■□□□□ 0.37
PTPN12-216ENST00000523952 FGD5Q6ZNL6 1462 aa17.31■□□□□ 0.36
PTPN12-216ENST00000523952 GRIN2BQ13224 1484 aa17.28■□□□□ 0.36
PTPN12-216ENST00000523952 SYNJ2O15056 1496 aa17.27■□□□□ 0.36
PTPN12-216ENST00000523952 GAPVD1Q14C86 1478 aa17.24■□□□□ 0.35
PTPN12-216ENST00000523952 CUX1P39880 1505 aa17.21■□□□□ 0.34
PTPN12-216ENST00000523952 KIF13AQ9H1H9 1805 aa17.14■□□□□ 0.34
PTPN12-216ENST00000523952 ABCA5Q8WWZ7 1642 aa17.14■□□□□ 0.33
PTPN12-216ENST00000523952 PIAS4Q8N2W9 510 aaPredicted RBP17.09■□□□□ 0.33
PTPN12-216ENST00000523952 ERCC6L2Q5T890 1561 aa17.09■□□□□ 0.33
PTPN12-216ENST00000523952 CEP170Q5SW79 1584 aa17.06■□□□□ 0.32
PTPN12-216ENST00000523952 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
PTPN12-216ENST00000523952 GRIN2AQ12879 1464 aa17.05■□□□□ 0.32
PTPN12-216ENST00000523952 ADAMTS12P58397 1594 aa17.04■□□□□ 0.32
PTPN12-216ENST00000523952 SHROOM2Q13796 1616 aa17.03■□□□□ 0.32
PTPN12-216ENST00000523952 TSPOAP1O95153 1857 aa16.95■□□□□ 0.3
PTPN12-216ENST00000523952 NUP160Q12769 1436 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms