Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
COL17A1Q9UMD9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC36.31■■■■□ 3.4
COL17A1Q9UMD9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC36.31■■■■□ 3.4
COL17A1Q9UMD9 MIR6722-201ENST00000617286 78 ntBASIC36.31■■■■□ 3.4
COL17A1Q9UMD9 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC36.31■■■■□ 3.4
COL17A1Q9UMD9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC36.3■■■■□ 3.4
COL17A1Q9UMD9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC36.29■■■■□ 3.4
COL17A1Q9UMD9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC36.29■■■■□ 3.4
COL17A1Q9UMD9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC36.29■■■■□ 3.4
COL17A1Q9UMD9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC36.29■■■■□ 3.4
COL17A1Q9UMD9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC36.29■■■■□ 3.4
COL17A1Q9UMD9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC36.29■■■■□ 3.4
COL17A1Q9UMD9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC36.28■■■■□ 3.4
COL17A1Q9UMD9 SF1-220ENST00000626028 704 ntTSL 2 BASIC36.27■■■■□ 3.4
COL17A1Q9UMD9 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC36.27■■■■□ 3.4
COL17A1Q9UMD9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC36.26■■■■□ 3.4
COL17A1Q9UMD9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC36.26■■■■□ 3.4
COL17A1Q9UMD9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC36.26■■■■□ 3.4
COL17A1Q9UMD9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC36.26■■■■□ 3.4
COL17A1Q9UMD9 ABCB10P1-201ENST00000614297 2181 ntBASIC36.26■■■■□ 3.4
COL17A1Q9UMD9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC36.26■■■■□ 3.39
COL17A1Q9UMD9 KRT18P5-201ENST00000436075 1291 ntBASIC36.25■■■■□ 3.39
COL17A1Q9UMD9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC36.25■■■■□ 3.39
COL17A1Q9UMD9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC36.25■■■■□ 3.39
COL17A1Q9UMD9 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC36.25■■■■□ 3.39
COL17A1Q9UMD9 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC36.25■■■■□ 3.39
COL17A1Q9UMD9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC36.24■■■■□ 3.39
COL17A1Q9UMD9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
COL17A1Q9UMD9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC36.24■■■■□ 3.39
COL17A1Q9UMD9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC36.24■■■■□ 3.39
COL17A1Q9UMD9 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC36.24■■■■□ 3.39
COL17A1Q9UMD9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
COL17A1Q9UMD9 IRS3P-201ENST00000223076 1006 ntBASIC36.23■■■■□ 3.39
COL17A1Q9UMD9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC36.23■■■■□ 3.39
COL17A1Q9UMD9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC36.22■■■■□ 3.39
COL17A1Q9UMD9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC36.21■■■■□ 3.39
COL17A1Q9UMD9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC36.21■■■■□ 3.39
COL17A1Q9UMD9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
COL17A1Q9UMD9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC36.21■■■■□ 3.39
COL17A1Q9UMD9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
COL17A1Q9UMD9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC36.2■■■■□ 3.39
COL17A1Q9UMD9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC36.2■■■■□ 3.39
COL17A1Q9UMD9 SP2-202ENST00000613139 908 ntTSL 5 BASIC36.2■■■■□ 3.39
COL17A1Q9UMD9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC36.2■■■■□ 3.39
COL17A1Q9UMD9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC36.2■■■■□ 3.39
COL17A1Q9UMD9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
COL17A1Q9UMD9 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC36.19■■■■□ 3.38
COL17A1Q9UMD9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
COL17A1Q9UMD9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC36.19■■■■□ 3.38
COL17A1Q9UMD9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC36.19■■■■□ 3.38
COL17A1Q9UMD9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC36.19■■■■□ 3.38
COL17A1Q9UMD9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC36.19■■■■□ 3.38
COL17A1Q9UMD9 ESRRAP2-201ENST00000418437 1549 ntBASIC36.19■■■■□ 3.38
COL17A1Q9UMD9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
COL17A1Q9UMD9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC36.18■■■■□ 3.38
COL17A1Q9UMD9 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC36.18■■■■□ 3.38
COL17A1Q9UMD9 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC36.18■■■■□ 3.38
COL17A1Q9UMD9 AL031602.1-201ENST00000633169 911 ntBASIC36.18■■■■□ 3.38
COL17A1Q9UMD9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC36.17■■■■□ 3.38
COL17A1Q9UMD9 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC36.17■■■■□ 3.38
COL17A1Q9UMD9 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC36.17■■■■□ 3.38
COL17A1Q9UMD9 AC027682.1-201ENST00000562846 899 ntBASIC36.17■■■■□ 3.38
COL17A1Q9UMD9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC36.17■■■■□ 3.38
COL17A1Q9UMD9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC36.16■■■■□ 3.38
COL17A1Q9UMD9 AC004448.1-201ENST00000458332 883 ntBASIC36.16■■■■□ 3.38
COL17A1Q9UMD9 AC034268.1-201ENST00000441047 882 ntBASIC36.15■■■■□ 3.38
COL17A1Q9UMD9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC36.15■■■■□ 3.38
COL17A1Q9UMD9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC36.14■■■■□ 3.38
COL17A1Q9UMD9 AL449106.1-201ENST00000608517 1980 ntBASIC36.14■■■■□ 3.38
COL17A1Q9UMD9 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC36.14■■■■□ 3.38
COL17A1Q9UMD9 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC36.14■■■■□ 3.38
COL17A1Q9UMD9 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC36.14■■■■□ 3.38
COL17A1Q9UMD9 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC36.14■■■■□ 3.38
COL17A1Q9UMD9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
COL17A1Q9UMD9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC36.13■■■■□ 3.37
COL17A1Q9UMD9 SLC47A1P1-202ENST00000449666 945 ntBASIC36.13■■■■□ 3.37
COL17A1Q9UMD9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC36.13■■■■□ 3.37
COL17A1Q9UMD9 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC36.13■■■■□ 3.37
COL17A1Q9UMD9 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 DUX4L19-201ENST00000557448 1267 ntBASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC36.12■■■■□ 3.37
COL17A1Q9UMD9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC36.11■■■■□ 3.37
COL17A1Q9UMD9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC36.11■■■■□ 3.37
COL17A1Q9UMD9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
COL17A1Q9UMD9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC36.11■■■■□ 3.37
COL17A1Q9UMD9 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC36.11■■■■□ 3.37
COL17A1Q9UMD9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC36.1■■■■□ 3.37
COL17A1Q9UMD9 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC36.1■■■■□ 3.37
COL17A1Q9UMD9 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC36.1■■■■□ 3.37
COL17A1Q9UMD9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC36.09■■■■□ 3.37
COL17A1Q9UMD9 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC36.08■■■■□ 3.37
COL17A1Q9UMD9 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
COL17A1Q9UMD9 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
COL17A1Q9UMD9 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC36.07■■■■□ 3.37
COL17A1Q9UMD9 SERBP1P1-201ENST00000396021 1160 ntBASIC36.07■■■■□ 3.37
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms