Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL12A1Q99715 IRS3P-201ENST00000223076 1006 ntBASIC20.91■□□□□ 0.94
COL12A1Q99715 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.91■□□□□ 0.94
COL12A1Q99715 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL12A1Q99715 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL12A1Q99715 SRD5A1P1-201ENST00000442297 786 ntBASIC20.91■□□□□ 0.94
COL12A1Q99715 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.91■□□□□ 0.94
COL12A1Q99715 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL12A1Q99715 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL12A1Q99715 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.94
COL12A1Q99715 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL12A1Q99715 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.91■□□□□ 0.94
COL12A1Q99715 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.91■□□□□ 0.94
COL12A1Q99715 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
COL12A1Q99715 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL12A1Q99715 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.9■□□□□ 0.94
COL12A1Q99715 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.89■□□□□ 0.94
COL12A1Q99715 AC004911.1-201ENST00000416316 871 ntBASIC20.89■□□□□ 0.94
COL12A1Q99715 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL12A1Q99715 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL12A1Q99715 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL12A1Q99715 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL12A1Q99715 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL12A1Q99715 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL12A1Q99715 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.88■□□□□ 0.93
COL12A1Q99715 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.88■□□□□ 0.93
COL12A1Q99715 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL12A1Q99715 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.88■□□□□ 0.93
COL12A1Q99715 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.87■□□□□ 0.93
COL12A1Q99715 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL12A1Q99715 AL449106.1-201ENST00000608517 1980 ntBASIC20.87■□□□□ 0.93
COL12A1Q99715 AC139426.1-201ENST00000568218 2529 ntBASIC20.87■□□□□ 0.93
COL12A1Q99715 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL12A1Q99715 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL12A1Q99715 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
COL12A1Q99715 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL12A1Q99715 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL12A1Q99715 AC027682.1-201ENST00000562846 899 ntBASIC20.86■□□□□ 0.93
COL12A1Q99715 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL12A1Q99715 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL12A1Q99715 KRT18P5-201ENST00000436075 1291 ntBASIC20.86■□□□□ 0.93
COL12A1Q99715 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.86■□□□□ 0.93
COL12A1Q99715 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL12A1Q99715 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL12A1Q99715 CA15P2-201ENST00000611168 834 ntBASIC20.85■□□□□ 0.93
COL12A1Q99715 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL12A1Q99715 AL031602.1-201ENST00000633169 911 ntBASIC20.85■□□□□ 0.93
COL12A1Q99715 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL12A1Q99715 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC20.85■□□□□ 0.93
COL12A1Q99715 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL12A1Q99715 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.84■□□□□ 0.93
COL12A1Q99715 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
COL12A1Q99715 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL12A1Q99715 ABCB10P1-201ENST00000614297 2181 ntBASIC20.84■□□□□ 0.93
COL12A1Q99715 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.84■□□□□ 0.93
COL12A1Q99715 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.84■□□□□ 0.93
COL12A1Q99715 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL12A1Q99715 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.84■□□□□ 0.93
COL12A1Q99715 RAP2CP1-201ENST00000605103 478 ntBASIC20.84■□□□□ 0.93
COL12A1Q99715 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL12A1Q99715 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL12A1Q99715 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL12A1Q99715 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
COL12A1Q99715 MIR4767-201ENST00000582827 78 ntBASIC20.83■□□□□ 0.93
COL12A1Q99715 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL12A1Q99715 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
COL12A1Q99715 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.83■□□□□ 0.92
COL12A1Q99715 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.83■□□□□ 0.92
COL12A1Q99715 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.83■□□□□ 0.92
COL12A1Q99715 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.83■□□□□ 0.92
COL12A1Q99715 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
COL12A1Q99715 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL12A1Q99715 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.82■□□□□ 0.92
COL12A1Q99715 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.82■□□□□ 0.92
COL12A1Q99715 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.82■□□□□ 0.92
COL12A1Q99715 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.82■□□□□ 0.92
COL12A1Q99715 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL12A1Q99715 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL12A1Q99715 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.81■□□□□ 0.92
COL12A1Q99715 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.81■□□□□ 0.92
COL12A1Q99715 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.81■□□□□ 0.92
COL12A1Q99715 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL12A1Q99715 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL12A1Q99715 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL12A1Q99715 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL12A1Q99715 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
COL12A1Q99715 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.81■□□□□ 0.92
COL12A1Q99715 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL12A1Q99715 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.81■□□□□ 0.92
COL12A1Q99715 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL12A1Q99715 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.8■□□□□ 0.92
COL12A1Q99715 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
COL12A1Q99715 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL12A1Q99715 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.8■□□□□ 0.92
COL12A1Q99715 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
COL12A1Q99715 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.79■□□□□ 0.92
COL12A1Q99715 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL12A1Q99715 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.79■□□□□ 0.92
COL12A1Q99715 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL12A1Q99715 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms