Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
DDX4Q9NQI0 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
DDX4Q9NQI0 AL031258.1-201ENST00000623562 325 ntBASIC34.93■■■■□ 3.18
DDX4Q9NQI0 ILK-212ENST00000532063 1617 ntTSL 2 BASIC34.88■■■■□ 3.17
DDX4Q9NQI0 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC34.88■■■■□ 3.17
DDX4Q9NQI0 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
DDX4Q9NQI0 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC34.82■■■■□ 3.17
DDX4Q9NQI0 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
DDX4Q9NQI0 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
DDX4Q9NQI0 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
DDX4Q9NQI0 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC34.65■■■■□ 3.14
DDX4Q9NQI0 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC34.65■■■■□ 3.14
DDX4Q9NQI0 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
DDX4Q9NQI0 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC34.6■■■■□ 3.13
DDX4Q9NQI0 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC34.6■■■■□ 3.13
DDX4Q9NQI0 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC34.6■■■■□ 3.13
DDX4Q9NQI0 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
DDX4Q9NQI0 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC34.55■■■■□ 3.12
DDX4Q9NQI0 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
DDX4Q9NQI0 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
DDX4Q9NQI0 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC34.47■■■■□ 3.11
DDX4Q9NQI0 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC34.47■■■■□ 3.11
DDX4Q9NQI0 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC34.45■■■■□ 3.11
DDX4Q9NQI0 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC34.44■■■■□ 3.1
DDX4Q9NQI0 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC34.43■■■■□ 3.1
DDX4Q9NQI0 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC34.4■■■■□ 3.1
DDX4Q9NQI0 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC34.39■■■■□ 3.1
DDX4Q9NQI0 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC34.38■■■■□ 3.09
DDX4Q9NQI0 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC34.38■■■■□ 3.09
DDX4Q9NQI0 EBPL-203ENST00000378270 579 ntTSL 2 BASIC34.31■■■■□ 3.08
DDX4Q9NQI0 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC34.3■■■■□ 3.08
DDX4Q9NQI0 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
DDX4Q9NQI0 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
DDX4Q9NQI0 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC34.28■■■■□ 3.08
DDX4Q9NQI0 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC34.27■■■■□ 3.08
DDX4Q9NQI0 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
DDX4Q9NQI0 RARRES2P7-201ENST00000567349 469 ntBASIC34.22■■■■□ 3.07
DDX4Q9NQI0 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC34.2■■■■□ 3.07
DDX4Q9NQI0 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC34.2■■■■□ 3.07
DDX4Q9NQI0 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC34.2■■■■□ 3.06
DDX4Q9NQI0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC34.19■■■■□ 3.06
DDX4Q9NQI0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC34.18■■■■□ 3.06
DDX4Q9NQI0 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC34.15■■■■□ 3.06
DDX4Q9NQI0 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
DDX4Q9NQI0 AC145285.7-201ENST00000614819 1539 ntBASIC34.14■■■■□ 3.06
DDX4Q9NQI0 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
DDX4Q9NQI0 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC34.08■■■■□ 3.05
DDX4Q9NQI0 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC34.07■■■■□ 3.04
DDX4Q9NQI0 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC34.04■■■■□ 3.04
DDX4Q9NQI0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC34.04■■■■□ 3.04
DDX4Q9NQI0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC34.04■■■■□ 3.04
DDX4Q9NQI0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC34.04■■■■□ 3.04
DDX4Q9NQI0 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC34.03■■■■□ 3.04
DDX4Q9NQI0 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC34.02■■■■□ 3.04
DDX4Q9NQI0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC34■■■■□ 3.03
DDX4Q9NQI0 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC33.98■■■■□ 3.03
DDX4Q9NQI0 AC136428.2-201ENST00000563187 214 ntBASIC33.97■■■■□ 3.03
DDX4Q9NQI0 SETD8P1-201ENST00000623146 1180 ntBASIC33.97■■■■□ 3.03
DDX4Q9NQI0 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC33.97■■■■□ 3.03
DDX4Q9NQI0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
DDX4Q9NQI0 AC097358.2-201ENST00000607541 1159 ntBASIC33.95■■■■□ 3.03
DDX4Q9NQI0 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
DDX4Q9NQI0 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
DDX4Q9NQI0 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC33.92■■■■□ 3.02
DDX4Q9NQI0 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
DDX4Q9NQI0 MVK-208ENST00000539696 608 ntTSL 5 BASIC33.91■■■■□ 3.02
DDX4Q9NQI0 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
DDX4Q9NQI0 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC33.87■■■■□ 3.01
DDX4Q9NQI0 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
DDX4Q9NQI0 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC33.84■■■■□ 3.01
DDX4Q9NQI0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC33.83■■■■□ 3.01
DDX4Q9NQI0 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
DDX4Q9NQI0 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC33.82■■■■□ 3
DDX4Q9NQI0 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC33.81■■■■□ 3
DDX4Q9NQI0 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC33.8■■■■□ 3
DDX4Q9NQI0 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC33.78■■■■□ 3
DDX4Q9NQI0 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC33.77■■■■□ 3
DDX4Q9NQI0 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC33.76■■■□□ 2.99
DDX4Q9NQI0 SUZ12P1-203ENST00000578195 985 ntBASIC33.75■■■□□ 2.99
DDX4Q9NQI0 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
DDX4Q9NQI0 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
DDX4Q9NQI0 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC33.72■■■□□ 2.99
DDX4Q9NQI0 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC33.7■■■□□ 2.99
DDX4Q9NQI0 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC33.65■■■□□ 2.98
DDX4Q9NQI0 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.65■■■□□ 2.98
DDX4Q9NQI0 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
DDX4Q9NQI0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
DDX4Q9NQI0 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
DDX4Q9NQI0 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC33.6■■■□□ 2.97
DDX4Q9NQI0 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
DDX4Q9NQI0 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC33.58■■■□□ 2.97
DDX4Q9NQI0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
DDX4Q9NQI0 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.57■■■□□ 2.96
DDX4Q9NQI0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
DDX4Q9NQI0 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.56■■■□□ 2.96
DDX4Q9NQI0 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
DDX4Q9NQI0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC33.55■■■□□ 2.96
DDX4Q9NQI0 CAHM-201ENST00000604200 896 ntBASIC33.54■■■□□ 2.96
DDX4Q9NQI0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
DDX4Q9NQI0 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC33.53■■■□□ 2.96
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms