Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC31.24■■■□□ 2.59
CDCA3Q99618 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.23■■■□□ 2.59
CDCA3Q99618 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC31.23■■■□□ 2.59
CDCA3Q99618 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CDCA3Q99618 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CDCA3Q99618 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC31.16■■■□□ 2.58
CDCA3Q99618 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CDCA3Q99618 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
CDCA3Q99618 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC31.11■■■□□ 2.57
CDCA3Q99618 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
CDCA3Q99618 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC31.1■■■□□ 2.57
CDCA3Q99618 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
CDCA3Q99618 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC31.08■■■□□ 2.57
CDCA3Q99618 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.08■■■□□ 2.57
CDCA3Q99618 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.06■■■□□ 2.56
CDCA3Q99618 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC31.06■■■□□ 2.56
CDCA3Q99618 RARRES2P7-201ENST00000567349 469 ntBASIC31.06■■■□□ 2.56
CDCA3Q99618 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
CDCA3Q99618 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
CDCA3Q99618 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.93■■■□□ 2.54
CDCA3Q99618 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.91■■■□□ 2.54
CDCA3Q99618 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.88■■■□□ 2.53
CDCA3Q99618 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
CDCA3Q99618 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.85■■■□□ 2.53
CDCA3Q99618 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.85■■■□□ 2.53
CDCA3Q99618 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CDCA3Q99618 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.84■■■□□ 2.53
CDCA3Q99618 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.83■■■□□ 2.53
CDCA3Q99618 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC30.81■■■□□ 2.52
CDCA3Q99618 AC097358.2-201ENST00000607541 1159 ntBASIC30.81■■■□□ 2.52
CDCA3Q99618 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CDCA3Q99618 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.51
CDCA3Q99618 SETD8P1-201ENST00000623146 1180 ntBASIC30.73■■■□□ 2.51
CDCA3Q99618 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.71■■■□□ 2.51
CDCA3Q99618 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CDCA3Q99618 AC136428.2-201ENST00000563187 214 ntBASIC30.69■■■□□ 2.5
CDCA3Q99618 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CDCA3Q99618 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30.67■■■□□ 2.5
CDCA3Q99618 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CDCA3Q99618 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CDCA3Q99618 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CDCA3Q99618 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC30.64■■■□□ 2.5
CDCA3Q99618 SUZ12P1-203ENST00000578195 985 ntBASIC30.58■■■□□ 2.49
CDCA3Q99618 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC30.57■■■□□ 2.48
CDCA3Q99618 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CDCA3Q99618 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.55■■■□□ 2.48
CDCA3Q99618 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
CDCA3Q99618 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CDCA3Q99618 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CDCA3Q99618 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.5■■■□□ 2.47
CDCA3Q99618 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CDCA3Q99618 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
CDCA3Q99618 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CDCA3Q99618 RPS2P35-201ENST00000443417 897 ntBASIC30.47■■■□□ 2.47
CDCA3Q99618 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC30.47■■■□□ 2.47
CDCA3Q99618 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CDCA3Q99618 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.45■■■□□ 2.47
CDCA3Q99618 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.44■■■□□ 2.46
CDCA3Q99618 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.41■■■□□ 2.46
CDCA3Q99618 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
CDCA3Q99618 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.4■■■□□ 2.46
CDCA3Q99618 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CDCA3Q99618 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CDCA3Q99618 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC30.35■■■□□ 2.45
CDCA3Q99618 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
CDCA3Q99618 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CDCA3Q99618 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.3■■■□□ 2.44
CDCA3Q99618 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.27■■■□□ 2.44
CDCA3Q99618 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CDCA3Q99618 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CDCA3Q99618 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
CDCA3Q99618 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CDCA3Q99618 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.23■■■□□ 2.43
CDCA3Q99618 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CDCA3Q99618 CAHM-201ENST00000604200 896 ntBASIC30.16■■■□□ 2.42
CDCA3Q99618 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CDCA3Q99618 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.12■■■□□ 2.41
CDCA3Q99618 AP006261.1-201ENST00000584783 668 ntBASIC30.12■■■□□ 2.41
CDCA3Q99618 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CDCA3Q99618 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CDCA3Q99618 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CDCA3Q99618 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.1■■■□□ 2.41
CDCA3Q99618 AL162393.1-201ENST00000437852 946 ntBASIC30.08■■■□□ 2.41
CDCA3Q99618 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CDCA3Q99618 AC145285.7-201ENST00000614819 1539 ntBASIC30.07■■■□□ 2.4
CDCA3Q99618 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CDCA3Q99618 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.07■■■□□ 2.4
CDCA3Q99618 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CDCA3Q99618 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CDCA3Q99618 AL391121.1-201ENST00000607967 1349 ntBASIC30.03■■■□□ 2.4
CDCA3Q99618 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
CDCA3Q99618 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
CDCA3Q99618 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
CDCA3Q99618 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.99■■■□□ 2.39
CDCA3Q99618 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.99■■■□□ 2.39
CDCA3Q99618 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
CDCA3Q99618 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
CDCA3Q99618 AL133380.1-201ENST00000506013 324 ntBASIC29.94■■■□□ 2.38
CDCA3Q99618 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CDCA3Q99618 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms