Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HSPG2P98160 SUZ12P1-203ENST00000578195 985 ntBASIC19.01■□□□□ 0.63
HSPG2P98160 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HSPG2P98160 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HSPG2P98160 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HSPG2P98160 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HSPG2P98160 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC18.95■□□□□ 0.62
HSPG2P98160 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HSPG2P98160 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HSPG2P98160 AC097358.2-201ENST00000607541 1159 ntBASIC18.87■□□□□ 0.61
HSPG2P98160 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HSPG2P98160 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HSPG2P98160 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HSPG2P98160 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HSPG2P98160 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC18.79■□□□□ 0.6
HSPG2P98160 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HSPG2P98160 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC18.77■□□□□ 0.6
HSPG2P98160 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HSPG2P98160 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HSPG2P98160 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HSPG2P98160 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
HSPG2P98160 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HSPG2P98160 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HSPG2P98160 SETD8P1-201ENST00000623146 1180 ntBASIC18.72■□□□□ 0.59
HSPG2P98160 NRG1-221ENST00000614767 762 ntTSL 5 BASIC18.71■□□□□ 0.59
HSPG2P98160 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.71■□□□□ 0.59
HSPG2P98160 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC18.7■□□□□ 0.58
HSPG2P98160 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC18.69■□□□□ 0.58
HSPG2P98160 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC18.69■□□□□ 0.58
HSPG2P98160 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HSPG2P98160 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HSPG2P98160 AL162393.1-201ENST00000437852 946 ntBASIC18.66■□□□□ 0.58
HSPG2P98160 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HSPG2P98160 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC18.62■□□□□ 0.57
HSPG2P98160 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC18.61■□□□□ 0.57
HSPG2P98160 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.58■□□□□ 0.56
HSPG2P98160 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HSPG2P98160 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HSPG2P98160 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HSPG2P98160 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC18.56■□□□□ 0.56
HSPG2P98160 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HSPG2P98160 KLF16-203ENST00000592313 508 ntTSL 3 BASIC18.53■□□□□ 0.56
HSPG2P98160 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HSPG2P98160 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.52■□□□□ 0.55
HSPG2P98160 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HSPG2P98160 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC18.51■□□□□ 0.55
HSPG2P98160 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HSPG2P98160 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.5■□□□□ 0.55
HSPG2P98160 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.5■□□□□ 0.55
HSPG2P98160 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HSPG2P98160 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HSPG2P98160 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HSPG2P98160 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HSPG2P98160 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC18.46■□□□□ 0.55
HSPG2P98160 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HSPG2P98160 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HSPG2P98160 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC18.44■□□□□ 0.54
HSPG2P98160 ABHD17AP4-201ENST00000411545 909 ntBASIC18.42■□□□□ 0.54
HSPG2P98160 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HSPG2P98160 CAHM-201ENST00000604200 896 ntBASIC18.4■□□□□ 0.54
HSPG2P98160 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HSPG2P98160 HLA-V-202ENST00000446817 847 ntBASIC18.4■□□□□ 0.54
HSPG2P98160 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HSPG2P98160 AP006261.1-201ENST00000584783 668 ntBASIC18.38■□□□□ 0.53
HSPG2P98160 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HSPG2P98160 MIR7108-201ENST00000614319 87 ntBASIC18.36■□□□□ 0.53
HSPG2P98160 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HSPG2P98160 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HSPG2P98160 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HSPG2P98160 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC18.35■□□□□ 0.53
HSPG2P98160 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HSPG2P98160 HNRNPLP2-201ENST00000568980 1570 ntBASIC18.35■□□□□ 0.53
HSPG2P98160 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.34■□□□□ 0.53
HSPG2P98160 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC18.34■□□□□ 0.53
HSPG2P98160 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HSPG2P98160 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.33■□□□□ 0.53
HSPG2P98160 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HSPG2P98160 AL391121.1-201ENST00000607967 1349 ntBASIC18.33■□□□□ 0.52
HSPG2P98160 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HSPG2P98160 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC18.31■□□□□ 0.52
HSPG2P98160 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HSPG2P98160 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
HSPG2P98160 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HSPG2P98160 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
HSPG2P98160 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HSPG2P98160 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HSPG2P98160 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HSPG2P98160 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HSPG2P98160 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HSPG2P98160 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HSPG2P98160 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC18.2■□□□□ 0.5
HSPG2P98160 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
HSPG2P98160 MLEC-202ENST00000412616 841 ntTSL 3 BASIC18.18■□□□□ 0.5
HSPG2P98160 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HSPG2P98160 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC18.14■□□□□ 0.5
HSPG2P98160 MIR3665-201ENST00000578708 105 ntBASIC18.14■□□□□ 0.5
HSPG2P98160 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.14■□□□□ 0.49
HSPG2P98160 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC18.14■□□□□ 0.49
HSPG2P98160 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.13■□□□□ 0.49
HSPG2P98160 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms