Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HSPG2P98160 SUZ12P1-203ENST00000578195 985 ntBASIC19.01■□□□□ 0.63
HSPG2P98160 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HSPG2P98160 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HSPG2P98160 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HSPG2P98160 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HSPG2P98160 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC18.95■□□□□ 0.62
HSPG2P98160 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HSPG2P98160 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HSPG2P98160 AC097358.2-201ENST00000607541 1159 ntBASIC18.87■□□□□ 0.61
HSPG2P98160 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HSPG2P98160 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HSPG2P98160 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HSPG2P98160 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HSPG2P98160 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC18.79■□□□□ 0.6
HSPG2P98160 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
HSPG2P98160 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC18.77■□□□□ 0.6
HSPG2P98160 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HSPG2P98160 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HSPG2P98160 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HSPG2P98160 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
HSPG2P98160 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HSPG2P98160 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HSPG2P98160 SETD8P1-201ENST00000623146 1180 ntBASIC18.72■□□□□ 0.59
HSPG2P98160 NRG1-221ENST00000614767 762 ntTSL 5 BASIC18.71■□□□□ 0.59
HSPG2P98160 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.71■□□□□ 0.59
HSPG2P98160 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC18.7■□□□□ 0.58
HSPG2P98160 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC18.69■□□□□ 0.58
HSPG2P98160 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC18.69■□□□□ 0.58
HSPG2P98160 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HSPG2P98160 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HSPG2P98160 AL162393.1-201ENST00000437852 946 ntBASIC18.66■□□□□ 0.58
HSPG2P98160 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HSPG2P98160 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC18.62■□□□□ 0.57
HSPG2P98160 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC18.61■□□□□ 0.57
HSPG2P98160 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.58■□□□□ 0.56
HSPG2P98160 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HSPG2P98160 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HSPG2P98160 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HSPG2P98160 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC18.56■□□□□ 0.56
HSPG2P98160 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HSPG2P98160 KLF16-203ENST00000592313 508 ntTSL 3 BASIC18.53■□□□□ 0.56
HSPG2P98160 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HSPG2P98160 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.52■□□□□ 0.55
HSPG2P98160 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HSPG2P98160 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC18.51■□□□□ 0.55
HSPG2P98160 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HSPG2P98160 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.5■□□□□ 0.55
HSPG2P98160 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.5■□□□□ 0.55
HSPG2P98160 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HSPG2P98160 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HSPG2P98160 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HSPG2P98160 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HSPG2P98160 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC18.46■□□□□ 0.55
HSPG2P98160 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HSPG2P98160 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HSPG2P98160 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC18.44■□□□□ 0.54
HSPG2P98160 ABHD17AP4-201ENST00000411545 909 ntBASIC18.42■□□□□ 0.54
HSPG2P98160 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HSPG2P98160 CAHM-201ENST00000604200 896 ntBASIC18.4■□□□□ 0.54
HSPG2P98160 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HSPG2P98160 HLA-V-202ENST00000446817 847 ntBASIC18.4■□□□□ 0.54
HSPG2P98160 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HSPG2P98160 AP006261.1-201ENST00000584783 668 ntBASIC18.38■□□□□ 0.53
HSPG2P98160 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HSPG2P98160 MIR7108-201ENST00000614319 87 ntBASIC18.36■□□□□ 0.53
HSPG2P98160 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HSPG2P98160 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HSPG2P98160 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HSPG2P98160 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC18.35■□□□□ 0.53
HSPG2P98160 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HSPG2P98160 HNRNPLP2-201ENST00000568980 1570 ntBASIC18.35■□□□□ 0.53
HSPG2P98160 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.34■□□□□ 0.53
HSPG2P98160 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC18.34■□□□□ 0.53
HSPG2P98160 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HSPG2P98160 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.33■□□□□ 0.53
HSPG2P98160 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HSPG2P98160 AL391121.1-201ENST00000607967 1349 ntBASIC18.33■□□□□ 0.52
HSPG2P98160 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HSPG2P98160 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC18.31■□□□□ 0.52
HSPG2P98160 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HSPG2P98160 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
HSPG2P98160 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HSPG2P98160 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
HSPG2P98160 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HSPG2P98160 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HSPG2P98160 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HSPG2P98160 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HSPG2P98160 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HSPG2P98160 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HSPG2P98160 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC18.2■□□□□ 0.5
HSPG2P98160 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.19■□□□□ 0.5
HSPG2P98160 MLEC-202ENST00000412616 841 ntTSL 3 BASIC18.18■□□□□ 0.5
HSPG2P98160 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HSPG2P98160 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC18.14■□□□□ 0.5
HSPG2P98160 MIR3665-201ENST00000578708 105 ntBASIC18.14■□□□□ 0.5
HSPG2P98160 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.14■□□□□ 0.49
HSPG2P98160 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC18.14■□□□□ 0.49
HSPG2P98160 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.13■□□□□ 0.49
HSPG2P98160 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms