Protein–RNA interactions for Protein: A6NCK2

TRIM43B, Tripartite motif-containing protein 43B, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43BA6NCK2 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.79■■■□□ 2.84
TRIM43BA6NCK2 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.79■■■□□ 2.84
TRIM43BA6NCK2 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
TRIM43BA6NCK2 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.74■■■□□ 2.83
TRIM43BA6NCK2 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.74■■■□□ 2.83
TRIM43BA6NCK2 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
TRIM43BA6NCK2 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.71■■■□□ 2.83
TRIM43BA6NCK2 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.7■■■□□ 2.83
TRIM43BA6NCK2 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
TRIM43BA6NCK2 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC32.67■■■□□ 2.82
TRIM43BA6NCK2 RARRES2P7-201ENST00000567349 469 ntBASIC32.63■■■□□ 2.81
TRIM43BA6NCK2 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
TRIM43BA6NCK2 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC32.55■■■□□ 2.8
TRIM43BA6NCK2 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
TRIM43BA6NCK2 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32.52■■■□□ 2.8
TRIM43BA6NCK2 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.49■■■□□ 2.79
TRIM43BA6NCK2 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC32.47■■■□□ 2.79
TRIM43BA6NCK2 AC097358.2-201ENST00000607541 1159 ntBASIC32.45■■■□□ 2.79
TRIM43BA6NCK2 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
TRIM43BA6NCK2 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
TRIM43BA6NCK2 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC32.39■■■□□ 2.78
TRIM43BA6NCK2 AC136428.2-201ENST00000563187 214 ntBASIC32.36■■■□□ 2.77
TRIM43BA6NCK2 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC32.34■■■□□ 2.77
TRIM43BA6NCK2 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.33■■■□□ 2.77
TRIM43BA6NCK2 RPS2P35-201ENST00000443417 897 ntBASIC32.32■■■□□ 2.76
TRIM43BA6NCK2 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
TRIM43BA6NCK2 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
TRIM43BA6NCK2 SUZ12P1-203ENST00000578195 985 ntBASIC32.29■■■□□ 2.76
TRIM43BA6NCK2 SETD8P1-201ENST00000623146 1180 ntBASIC32.27■■■□□ 2.76
TRIM43BA6NCK2 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
TRIM43BA6NCK2 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
TRIM43BA6NCK2 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.24■■■□□ 2.75
TRIM43BA6NCK2 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.24■■■□□ 2.75
TRIM43BA6NCK2 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
TRIM43BA6NCK2 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.16■■■□□ 2.74
TRIM43BA6NCK2 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.15■■■□□ 2.74
TRIM43BA6NCK2 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
TRIM43BA6NCK2 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
TRIM43BA6NCK2 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC32.14■■■□□ 2.74
TRIM43BA6NCK2 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.11■■■□□ 2.73
TRIM43BA6NCK2 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.11■■■□□ 2.73
TRIM43BA6NCK2 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.1■■■□□ 2.73
TRIM43BA6NCK2 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
TRIM43BA6NCK2 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.08■■■□□ 2.73
TRIM43BA6NCK2 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.07■■■□□ 2.72
TRIM43BA6NCK2 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
TRIM43BA6NCK2 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.04■■■□□ 2.72
TRIM43BA6NCK2 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.03■■■□□ 2.72
TRIM43BA6NCK2 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
TRIM43BA6NCK2 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC32■■■□□ 2.71
TRIM43BA6NCK2 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.99■■■□□ 2.71
TRIM43BA6NCK2 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC31.96■■■□□ 2.71
TRIM43BA6NCK2 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
TRIM43BA6NCK2 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.94■■■□□ 2.7
TRIM43BA6NCK2 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
TRIM43BA6NCK2 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC31.9■■■□□ 2.7
TRIM43BA6NCK2 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.87■■■□□ 2.69
TRIM43BA6NCK2 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.85■■■□□ 2.69
TRIM43BA6NCK2 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
TRIM43BA6NCK2 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC31.81■■■□□ 2.68
TRIM43BA6NCK2 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
TRIM43BA6NCK2 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.78■■■□□ 2.68
TRIM43BA6NCK2 CAHM-201ENST00000604200 896 ntBASIC31.75■■■□□ 2.67
TRIM43BA6NCK2 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
TRIM43BA6NCK2 AL162393.1-201ENST00000437852 946 ntBASIC31.73■■■□□ 2.67
TRIM43BA6NCK2 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.73■■■□□ 2.67
TRIM43BA6NCK2 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
TRIM43BA6NCK2 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.7■■■□□ 2.67
TRIM43BA6NCK2 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
TRIM43BA6NCK2 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
TRIM43BA6NCK2 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
TRIM43BA6NCK2 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
TRIM43BA6NCK2 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
TRIM43BA6NCK2 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
TRIM43BA6NCK2 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.58■■■□□ 2.65
TRIM43BA6NCK2 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
TRIM43BA6NCK2 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.57■■■□□ 2.64
TRIM43BA6NCK2 AP006261.1-201ENST00000584783 668 ntBASIC31.56■■■□□ 2.64
TRIM43BA6NCK2 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.56■■■□□ 2.64
TRIM43BA6NCK2 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
TRIM43BA6NCK2 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
TRIM43BA6NCK2 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
TRIM43BA6NCK2 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.52■■■□□ 2.64
TRIM43BA6NCK2 AL391121.1-201ENST00000607967 1349 ntBASIC31.5■■■□□ 2.63
TRIM43BA6NCK2 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.5■■■□□ 2.63
TRIM43BA6NCK2 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
TRIM43BA6NCK2 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
TRIM43BA6NCK2 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
TRIM43BA6NCK2 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
TRIM43BA6NCK2 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
TRIM43BA6NCK2 AC145285.7-201ENST00000614819 1539 ntBASIC31.47■■■□□ 2.63
TRIM43BA6NCK2 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
TRIM43BA6NCK2 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.46■■■□□ 2.63
TRIM43BA6NCK2 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
TRIM43BA6NCK2 ILK-212ENST00000532063 1617 ntTSL 2 BASIC31.45■■■□□ 2.62
TRIM43BA6NCK2 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.43■■■□□ 2.62
TRIM43BA6NCK2 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
TRIM43BA6NCK2 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
TRIM43BA6NCK2 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.37■■■□□ 2.61
TRIM43BA6NCK2 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms