Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC36.57■■■■□ 3.45
COL17A1Q9UMD9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC36.57■■■■□ 3.45
COL17A1Q9UMD9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC36.57■■■■□ 3.45
COL17A1Q9UMD9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC36.57■■■■□ 3.45
COL17A1Q9UMD9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC36.57■■■■□ 3.45
COL17A1Q9UMD9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
COL17A1Q9UMD9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
COL17A1Q9UMD9 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC36.56■■■■□ 3.44
COL17A1Q9UMD9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
COL17A1Q9UMD9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
COL17A1Q9UMD9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC36.56■■■■□ 3.44
COL17A1Q9UMD9 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
COL17A1Q9UMD9 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
COL17A1Q9UMD9 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC36.55■■■■□ 3.44
COL17A1Q9UMD9 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC36.55■■■■□ 3.44
COL17A1Q9UMD9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC36.55■■■■□ 3.44
COL17A1Q9UMD9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC36.55■■■■□ 3.44
COL17A1Q9UMD9 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
COL17A1Q9UMD9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC36.54■■■■□ 3.44
COL17A1Q9UMD9 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
COL17A1Q9UMD9 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC36.54■■■■□ 3.44
COL17A1Q9UMD9 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
COL17A1Q9UMD9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
COL17A1Q9UMD9 AC091305.1-201ENST00000479476 895 ntBASIC36.52■■■■□ 3.44
COL17A1Q9UMD9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC36.52■■■■□ 3.44
COL17A1Q9UMD9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC36.52■■■■□ 3.44
COL17A1Q9UMD9 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC36.52■■■■□ 3.44
COL17A1Q9UMD9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
COL17A1Q9UMD9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
COL17A1Q9UMD9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC36.51■■■■□ 3.44
COL17A1Q9UMD9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC36.51■■■■□ 3.43
COL17A1Q9UMD9 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC36.5■■■■□ 3.43
COL17A1Q9UMD9 AC092437.1-201ENST00000624794 1048 ntBASIC36.5■■■■□ 3.43
COL17A1Q9UMD9 AL139393.2-201ENST00000608721 2025 ntBASIC36.49■■■■□ 3.43
COL17A1Q9UMD9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
COL17A1Q9UMD9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
COL17A1Q9UMD9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC36.48■■■■□ 3.43
COL17A1Q9UMD9 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
COL17A1Q9UMD9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC36.47■■■■□ 3.43
COL17A1Q9UMD9 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC36.47■■■■□ 3.43
COL17A1Q9UMD9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC36.47■■■■□ 3.43
COL17A1Q9UMD9 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC36.46■■■■□ 3.43
COL17A1Q9UMD9 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC36.45■■■■□ 3.43
COL17A1Q9UMD9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC36.45■■■■□ 3.43
COL17A1Q9UMD9 MAG-206ENST00000597035 542 ntTSL 4 BASIC36.44■■■■□ 3.42
COL17A1Q9UMD9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC36.43■■■■□ 3.42
COL17A1Q9UMD9 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC36.43■■■■□ 3.42
COL17A1Q9UMD9 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC36.43■■■■□ 3.42
COL17A1Q9UMD9 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC36.42■■■■□ 3.42
COL17A1Q9UMD9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
COL17A1Q9UMD9 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC36.42■■■■□ 3.42
COL17A1Q9UMD9 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC36.42■■■■□ 3.42
COL17A1Q9UMD9 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC36.41■■■■□ 3.42
COL17A1Q9UMD9 SRD5A1P1-201ENST00000442297 786 ntBASIC36.41■■■■□ 3.42
COL17A1Q9UMD9 CA15P2-201ENST00000611168 834 ntBASIC36.41■■■■□ 3.42
COL17A1Q9UMD9 AC022517.1-201ENST00000592429 346 ntBASIC36.4■■■■□ 3.42
COL17A1Q9UMD9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC36.4■■■■□ 3.42
COL17A1Q9UMD9 SNX5-217ENST00000606557 1087 ntBASIC36.39■■■■□ 3.42
COL17A1Q9UMD9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC36.39■■■■□ 3.42
COL17A1Q9UMD9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC36.38■■■■□ 3.41
COL17A1Q9UMD9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC36.38■■■■□ 3.41
COL17A1Q9UMD9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC36.37■■■■□ 3.41
COL17A1Q9UMD9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC36.37■■■■□ 3.41
COL17A1Q9UMD9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC36.37■■■■□ 3.41
COL17A1Q9UMD9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
COL17A1Q9UMD9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC36.36■■■■□ 3.41
COL17A1Q9UMD9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC36.36■■■■□ 3.41
COL17A1Q9UMD9 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
COL17A1Q9UMD9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC36.35■■■■□ 3.41
COL17A1Q9UMD9 ID1-201ENST00000376105 1233 ntBASIC36.35■■■■□ 3.41
COL17A1Q9UMD9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC36.35■■■■□ 3.41
COL17A1Q9UMD9 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC36.35■■■■□ 3.41
COL17A1Q9UMD9 AL137784.2-201ENST00000607332 1000 ntBASIC36.35■■■■□ 3.41
COL17A1Q9UMD9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC36.34■■■■□ 3.41
COL17A1Q9UMD9 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC36.33■■■■□ 3.41
COL17A1Q9UMD9 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC36.33■■■■□ 3.41
COL17A1Q9UMD9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC36.33■■■■□ 3.41
COL17A1Q9UMD9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC36.33■■■■□ 3.41
COL17A1Q9UMD9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC36.33■■■■□ 3.41
COL17A1Q9UMD9 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC36.33■■■■□ 3.41
COL17A1Q9UMD9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC36.33■■■■□ 3.41
COL17A1Q9UMD9 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC36.32■■■■□ 3.41
COL17A1Q9UMD9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC36.32■■■■□ 3.41
COL17A1Q9UMD9 MIR4767-201ENST00000582827 78 ntBASIC36.32■■■■□ 3.41
COL17A1Q9UMD9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC36.32■■■■□ 3.41
COL17A1Q9UMD9 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC36.32■■■■□ 3.41
COL17A1Q9UMD9 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC36.32■■■■□ 3.4
COL17A1Q9UMD9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC36.32■■■■□ 3.4
COL17A1Q9UMD9 RASA4CP-201ENST00000424092 1398 ntBASIC36.32■■■■□ 3.4
COL17A1Q9UMD9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC36.32■■■■□ 3.4
COL17A1Q9UMD9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
COL17A1Q9UMD9 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC36.31■■■■□ 3.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms