Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 YTHDF2-204ENST00000475796 358 ntTSL 28.28□□□□□ -1.081e-9■□□□□ 10
DDX42Q86XP3 YTHDF2-205ENST00000476976 657 ntTSL 37.65□□□□□ -1.181e-9■□□□□ 10
DDX42Q86XP3 DDX5-210ENST00000578804 2021 ntTSL 1 (best) BASIC14.27□□□□□ -0.125e-6■□□□□ 9.9
DDX42Q86XP3 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.452e-10■□□□□ 9.8
DDX42Q86XP3 TMEM248-205ENST00000433271 1610 ntTSL 1 (best)27.36■■□□□ 1.972e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-209ENST00000434453 2229 ntTSL 527.05■■□□□ 1.922e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-217ENST00000546023 1135 ntTSL 1 (best)26.75■■□□□ 1.872e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-214ENST00000543532 561 ntTSL 425.74■■□□□ 1.712e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-214ENST00000461469 560 ntTSL 324.85■■□□□ 1.572e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-209ENST00000538128 557 ntTSL 424.03■■□□□ 1.442e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-211ENST00000444719 762 ntTSL 323.51■■□□□ 1.352e-6■□□□□ 9.8
DDX42Q86XP3 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.312e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.25■■□□□ 1.312e-6■□□□□ 9.8
DDX42Q86XP3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.142e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-217ENST00000485985 644 ntTSL 222.07■■□□□ 1.122e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-205ENST00000430278 523 ntTSL 421.94■■□□□ 1.12e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-207ENST00000433968 578 ntTSL 421.94■■□□□ 1.12e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-210ENST00000434503 930 ntTSL 521.94■■□□□ 1.12e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-203ENST00000414218 451 ntTSL 521.83■■□□□ 1.092e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-213ENST00000454132 2922 ntTSL 221.72■■□□□ 1.072e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-219ENST00000498034 478 ntTSL 321.53■■□□□ 1.042e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-208ENST00000434278 678 ntTSL 521.33■■□□□ 1.012e-6■□□□□ 9.8
DDX42Q86XP3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.982e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-208ENST00000537390 691 ntTSL 520.62■□□□□ 0.892e-6■□□□□ 9.8
DDX42Q86XP3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.832e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-213ENST00000543517 561 ntTSL 420.06■□□□□ 0.82e-6■□□□□ 9.8
DDX42Q86XP3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.722e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-206ENST00000536607 572 ntTSL 219.3■□□□□ 0.682e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-208ENST00000461888 2277 ntTSL 518.7■□□□□ 0.582e-6■□□□□ 9.8
DDX42Q86XP3 GOLGA2-203ENST00000458730 704 ntTSL 518.57■□□□□ 0.562e-6■□□□□ 9.8
DDX42Q86XP3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.522e-6■□□□□ 9.8
DDX42Q86XP3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.492e-6■□□□□ 9.8
DDX42Q86XP3 CCSAP-204ENST00000483092 3492 ntTSL 1 (best)17.84■□□□□ 0.452e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.81■□□□□ 0.442e-6■□□□□ 9.8
DDX42Q86XP3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.392e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.15■□□□□ 0.342e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-215ENST00000442447 644 ntTSL 217.08■□□□□ 0.322e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.89■□□□□ 0.292e-6■□□□□ 9.8
DDX42Q86XP3 NUDT4-207ENST00000550056 531 ntTSL 416.7■□□□□ 0.262e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-204ENST00000374038 1026 ntTSL 516.38■□□□□ 0.212e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-219ENST00000453310 1068 ntTSL 216.38■□□□□ 0.212e-6■□□□□ 9.8
DDX42Q86XP3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.22e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-210ENST00000538530 918 ntTSL 516■□□□□ 0.152e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-213ENST00000433027 611 ntTSL 515.96■□□□□ 0.152e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.132e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-211ENST00000539756 780 ntTSL 315.85■□□□□ 0.132e-6■□□□□ 9.8
DDX42Q86XP3 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.092e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.012e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-212ENST00000429968 2149 ntTSL 215.07■□□□□ 02e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-207ENST00000412738 1018 ntTSL 314.6□□□□□ -0.072e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-216ENST00000444878 2124 ntTSL 214.59□□□□□ -0.072e-6■□□□□ 9.8
DDX42Q86XP3 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.082e-6■□□□□ 9.8
DDX42Q86XP3 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.112e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.132e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC14.13□□□□□ -0.152e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-215ENST00000490368 876 ntTSL 313.92□□□□□ -0.182e-6■□□□□ 9.8
DDX42Q86XP3 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC13.76□□□□□ -0.212e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.252e-6■□□□□ 9.8
DDX42Q86XP3 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.282e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-206ENST00000403542 2883 ntTSL 213.22□□□□□ -0.292e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-214ENST00000481831 1881 ntTSL 213.09□□□□□ -0.312e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-202ENST00000338163 2792 ntTSL 213.03□□□□□ -0.322e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-245ENST00000639702 5914 ntTSL 512.6□□□□□ -0.392e-6■□□□□ 9.8
DDX42Q86XP3 NUDT4-203ENST00000546925 569 ntTSL 412.53□□□□□ -0.42e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-223ENST00000463004 4580 ntTSL 512.17□□□□□ -0.462e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-202ENST00000368073 4106 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.472e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-213ENST00000477163 513 ntTSL 311.08□□□□□ -0.642e-6■□□□□ 9.8
DDX42Q86XP3 NUDT4-204ENST00000547014 1419 ntTSL 2 BASIC10.85□□□□□ -0.672e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-214ENST00000434927 716 ntTSL 59.91□□□□□ -0.822e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-217ENST00000497354 738 ntTSL 59.59□□□□□ -0.872e-6■□□□□ 9.8
DDX42Q86XP3 DCAF8-203ENST00000368074 3824 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.92e-6■□□□□ 9.8
DDX42Q86XP3 NUDT4-205ENST00000548662 765 ntTSL 3 BASIC9.25□□□□□ -0.932e-6■□□□□ 9.8
DDX42Q86XP3 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC9.23□□□□□ -0.932e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-208ENST00000416108 577 ntTSL 48.72□□□□□ -1.012e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-209ENST00000416529 594 ntTSL 38.09□□□□□ -1.112e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-218ENST00000449489 432 ntTSL 57.83□□□□□ -1.162e-6■□□□□ 9.8
DDX42Q86XP3 LMBR1-204ENST00000415428 3457 ntTSL 1 (best)6.74□□□□□ -1.332e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-232ENST00000481037 687 ntTSL 36.56□□□□□ -1.362e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-211ENST00000426951 840 ntTSL 1 (best)5.94□□□□□ -1.462e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-231ENST00000477334 949 ntTSL 25.94□□□□□ -1.462e-6■□□□□ 9.8
DDX42Q86XP3 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.522e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-210ENST00000425184 526 ntTSL 35.2□□□□□ -1.582e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-234ENST00000487604 370 ntTSL 34.93□□□□□ -1.622e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.722e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-220ENST00000455343 441 ntTSL 53.89□□□□□ -1.792e-6■□□□□ 9.8
DDX42Q86XP3 RBM39-221ENST00000461283 2415 ntTSL 53.86□□□□□ -1.792e-6■□□□□ 9.8
DDX42Q86XP3 PTBP1-205ENST00000585535 314 ntTSL 312.11□□□□□ -0.472e-6■□□□□ 9.7
DDX42Q86XP3 HSP90AA1-208ENST00000557234 584 ntTSL 319.4■□□□□ 0.72e-7■□□□□ 9.7
DDX42Q86XP3 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.062e-7■□□□□ 9.7
DDX42Q86XP3 HSP90AA1-202ENST00000334701 3510 ntTSL 1 (best) BASIC14.08□□□□□ -0.162e-7■□□□□ 9.7
DDX42Q86XP3 HSP90AA1-203ENST00000553585 581 ntTSL 36.97□□□□□ -1.292e-7■□□□□ 9.7
DDX42Q86XP3 HSP90AA1-206ENST00000556554 552 ntTSL 26.97□□□□□ -1.292e-7■□□□□ 9.7
DDX42Q86XP3 EIF1-204ENST00000469308 815 ntTSL 223.91■■□□□ 1.427e-8■□□□□ 9.7
DDX42Q86XP3 EIF1-202ENST00000462917 2170 ntTSL 1 (best)19.81■□□□□ 0.767e-8■□□□□ 9.7
DDX42Q86XP3 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.67e-8■□□□□ 9.7
DDX42Q86XP3 TFRC-204ENST00000421258 524 ntTSL 313.66□□□□□ -0.227e-8■□□□□ 9.7
DDX42Q86XP3 TFRC-208ENST00000464011 546 ntTSL 411.17□□□□□ -0.627e-8■□□□□ 9.7
DDX42Q86XP3 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.817e-8■□□□□ 9.7
DDX42Q86XP3 EIF1-201ENST00000310837 1120 ntTSL 1 (best)9.3□□□□□ -0.927e-8■□□□□ 9.7
DDX42Q86XP3 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.037e-8■□□□□ 9.7
Retrieved 100 of 2,477 protein–RNA pairs in 132.5 ms